Difference between revisions of "TSS:Mm 100696.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK160492:130 AK083947:484 |chr=chr11 |cpg_percent=0.025 |distance=130 |distance_to_tss=9236 |end=3530065 |entrez_id=29856 |gc_percent=0.636816 |gene_ali...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1354727 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=9236 | |distance_to_tss=9236 | ||
|end=3530065 | |end=3530065 | ||
| + | |end_of_center_position=3530056 | ||
|entrez_id=29856 | |entrez_id=29856 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:1354727 | |hgnc_mgi_id=MGI:1354727 | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| − | |num_trans= | + | |num_trans=29856 |
|species=mouse | |species=mouse | ||
|start=3530046 | |start=3530046 | ||
| + | |start_of_center_position=3530055 | ||
|strand=- | |strand=- | ||
|transcript_name=AK160492 | |transcript_name=AK160492 | ||
Latest revision as of 10:44, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3530055 |
|---|---|
| End of the center position in the TSS region: | 3530056 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK160492 |
|---|---|
| Distance: | 130 |
| Num_trans: | 29856 |
| All_trans: | MGI:1354727 |
TATA-Box annotation
| Distance to TSS: | 9236 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | smoothelin |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
