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Difference between revisions of "TSS:Mm 100729.1"

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{{TSSDetail
 
{{TSSDetail
 
|Tcn-2=
 
|Tcn-2=
|all_trans=AF090686:6 AK196753:13 AK197212:13 ENSMUST00000109992.7:-190 ENSMUST00000109988.1:-205 ENSMUST00000109990.7:-361 NM_001130459:-362 AK143761:-362 ENSMUST00000020710.10:-396 AK161618:-411 AK147176:-415 AK133707:-443 ENSMUST00000109989.9:-445 NM_015749:-445 AK170401:-466 ENSMUST00000109991.7:-479 NM_001130458:-479
+
|all_trans=MGI:98534
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.01
 
|cpg_percent=0.01
Line 23: Line 23:
 
|nearest_refseq=NM_015749
 
|nearest_refseq=NM_015749
 
|nearest_unigene=Mm.20948
 
|nearest_unigene=Mm.20948
|num_trans=17
+
|num_trans=21452
 
|species=mouse
 
|species=mouse
 
|start=3931588
 
|start=3931588

Latest revision as of 10:44, 26 July 2021

Basic information about the TSS


TSS ID:mm_100729.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:3931588
End:3931599
Strand:-
TSS Score:1
Start of the center position in the TSS region:3931593
End of the center position in the TSS region:3931594



Gene and protein annotation


Transcript_name:AF090686
Distance:6
GeneID:21452
HGNC/MGI_ID:MGI:98534
UniProt_ID:
Gene_name:transcobalamin 2
Gene_symbol:Tcn2
Gene_synonyms:Tcn-2
Gene_source:MGI:98534



Transcript annotation


Transcript_name:AF090686
Distance:6
Num_trans:21452
All_trans:MGI:98534



TATA-Box annotation


Distance to TSS:367
Nearest PromoterID:NM_001130459
Entrez ID:21452
Nearest Unigene:Mm.20948
Nearest Refseq:NM_015749
Nearest Ensembl:ENSMUSG00000020432
Gene Name:transcobalamin 2
Gene Alias:AW208754|Tcn-2
Gene Description:transcobalamin 2
Gene Type:protein-coding
CpG%:0.01
GC%:0.507463
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):