Difference between revisions of "TSS:Mm 100743.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Spf= | |Spf= | ||
|TAP= | |TAP= | ||
| − | |all_trans= | + | |all_trans=MGI:1915065 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_144520 | |nearest_refseq=NM_144520 | ||
|nearest_unigene=Mm.253922 | |nearest_unigene=Mm.253922 | ||
| − | |num_trans= | + | |num_trans=67815 |
|species=mouse | |species=mouse | ||
|start=4118723 | |start=4118723 | ||
| Line 30: | Line 30: | ||
|strand=- | |strand=- | ||
|tata_box=-72(TCCTTTAAGAGG,-,0.00),-71(CCTTTAAGAGGC,+,0.00) | |tata_box=-72(TCCTTTAAGAGG,-,0.00),-71(CCTTTAAGAGGC,+,0.00) | ||
| − | |transcript_name=ENSMUST00000136420.1 | + | |transcript_name=ENSMUST00000136420.1 BC005759 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100743.1 | |tss_id=mm_100743.1 | ||
Latest revision as of 10:45, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4118746 |
|---|---|
| End of the center position in the TSS region: | 4118747 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000136420.1 BC005759 |
|---|---|
| Distance: | 0 |
| Num_trans: | 67815 |
| All_trans: | MGI:1915065 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_144520 |
| Entrez ID: | 67815 |
| Nearest Unigene: | Mm.253922 |
| Nearest Refseq: | NM_144520 |
| Nearest Ensembl: | ENSMUSG00000003585 |
| Gene Name: | SEC14-like lipid binding 2 |
| Gene Alias: | 1300013M05Rik|Spf|TAP |
| Gene Description: | SEC14-like lipid binding 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -72(TCCTTTAAGAGG,-,0.00),-71(CCTTTAAGAGGC,+,0.00) |
