Difference between revisions of "TSS:Mm 100770.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000009219.2 | + | |all_trans=NM_138948:0 LF198357:0 MA433934:0 LF202993:-89 MA438570:-89 ENSMUST00000009219.2:375 AF419324:375 BC104356:376 BC104357:376 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=9 |
|end=4747188 | |end=4747188 | ||
| + | |end_of_center_position=4747171 | ||
|entrez_id=192650 | |entrez_id=192650 | ||
|gc_percent=0.845771 | |gc_percent=0.845771 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_138948 | |nearest_refseq=NM_138948 | ||
|nearest_unigene=Mm.207056 | |nearest_unigene=Mm.207056 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=4747152 | |start=4747152 | ||
| + | |start_of_center_position=4747170 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF198357 MA433934 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100770.1 | |tss_id=mm_100770.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q91ZM8 |
}} | }} | ||
Latest revision as of 10:45, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 4747170 |
|---|---|
| End of the center position in the TSS region: | 4747171 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF198357 MA433934 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | NM_138948:0 LF198357:0 MA433934:0 LF202993:-89 MA438570:-89 ENSMUST00000009219.2:375 AF419324:375 BC104356:376 BC104357:376 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_138948 |
| Entrez ID: | 192650 |
| Nearest Unigene: | Mm.207056 |
| Nearest Refseq: | NM_138948 |
| Nearest Ensembl: | ENSMUSG00000009075 |
| Gene Name: | calcium binding protein 7 |
| Gene Alias: | - |
| Gene Description: | calcium binding protein 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.845771 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
