Difference between revisions of "TSS:Mm 100802.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK149253:7 |chr=chr11 |cpg_percent=0.01 |distance=7 |distance_to_tss=5758 |end=4992597 |entrez_id=11764 |gc_percent=0.412935 |gene_alias=Adtb1|b2b1660Cl...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:3642246 |
| + | |b2b1660Clo= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=5758 | |distance_to_tss=5758 | ||
|end=4992597 | |end=4992597 | ||
| + | |end_of_center_position=4992582 | ||
|entrez_id=11764 | |entrez_id=11764 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=Adtb1 | + | |gene_alias=Adtb1{{!}}b2b1660Clo |
| − | |gene_description= | + | |gene_description=adaptor protein complex AP-1, beta 1 subunit |
|gene_id=100038587 | |gene_id=100038587 | ||
|gene_name=predicted gene 10278 | |gene_name=predicted gene 10278 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=MGI:3642246 | |hgnc_mgi_id=MGI:3642246 | ||
|nearest_ensembl=ENSMUSG00000009090 | |nearest_ensembl=ENSMUSG00000009090 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001243044 |
|nearest_refseq=NM_007454 | |nearest_refseq=NM_007454 | ||
|nearest_unigene=Mm.274816 | |nearest_unigene=Mm.274816 | ||
| − | |num_trans= | + | |num_trans=100038587 |
|species=mouse | |species=mouse | ||
|start=4992566 | |start=4992566 | ||
| + | |start_of_center_position=4992581 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-61(CACTTTAAAGAC,-,0.00) |
|transcript_name=AK149253 | |transcript_name=AK149253 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 10:46, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4992581 |
|---|---|
| End of the center position in the TSS region: | 4992582 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK149253 |
|---|---|
| Distance: | 7 |
| Num_trans: | 100038587 |
| All_trans: | MGI:3642246 |
TATA-Box annotation
| Distance to TSS: | 5758 |
|---|---|
| Nearest PromoterID: | NM_001243044 |
| Entrez ID: | 11764 |
| Nearest Unigene: | Mm.274816 |
| Nearest Refseq: | NM_007454 |
| Nearest Ensembl: | ENSMUSG00000009090 |
| Gene Name: | predicted gene 10278 |
| Gene Alias: | Adtb1|b2b1660Clo |
| Gene Description: | adaptor protein complex AP-1, beta 1 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -61(CACTTTAAAGAC,-,0.00) |
