Difference between revisions of "TSS:Mm 100806.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|Gar22= | |Gar22= | ||
|TU-71.1= | |TU-71.1= | ||
| − | |all_trans= | + | |all_trans=MGI:1926176 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| Line 12: | Line 12: | ||
|entrez_id=78926 | |entrez_id=78926 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=4930500E24Rik | + | |gene_alias=4930500E24Rik{{!}}D0Jmb1{{!}}Gar22{{!}}TU-71.1 |
|gene_description=growth arrest-specific 2 like 1 | |gene_description=growth arrest-specific 2 like 1 | ||
|gene_id=78926 | |gene_id=78926 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=MGI:1926176 | |hgnc_mgi_id=MGI:1926176 | ||
|nearest_ensembl=ENSMUSG00000034201 | |nearest_ensembl=ENSMUSG00000034201 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001190406 |
|nearest_refseq=NM_030228 | |nearest_refseq=NM_030228 | ||
|nearest_unigene=Mm.44591 | |nearest_unigene=Mm.44591 | ||
| − | |num_trans= | + | |num_trans=78926 |
|species=mouse | |species=mouse | ||
|start=5065276 | |start=5065276 | ||
|start_of_center_position=5065302 | |start_of_center_position=5065302 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-81(GCCCCTTTAAGA,-,0.00),-79(CCCTTTAAGAGC,+,0.00),-79(CCCTTTAAGAGC,-,0.00),-78(CCTTTAAGAGCG,+,0.00) |
| − | |transcript_name=ENSMUST00000122886.7 ENSMUST00000037146.9 ENSMUST00000056649.12 ENSMUST00000109895.1 ENSMUST00000152257.1 ENSMUST00000151936.1 | + | |transcript_name=ENSMUST00000122886.7 ENSMUST00000037146.9 ENSMUST00000056649.12 ENSMUST00000109895.1 ENSMUST00000152257.1 ENSMUST00000151936.1 AK082864 AK019661 BC031785 AK052229 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100806.1 | |tss_id=mm_100806.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8JZP9 | + | |uniprot_id=Q8JZP9 Q9D2H3 Z4YN41 |
}} | }} | ||
Latest revision as of 10:46, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5065302 |
|---|---|
| End of the center position in the TSS region: | 5065303 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000122886.7 ENSMUST00000037146.9 ENSMUST00000056649.12 ENSMUST00000109895.1 ENSMUST00000152257.1 ENSMUST00000151936.1 AK082864 AK019661 BC031785 AK052229 |
|---|---|
| Distance: | 0 |
| Num_trans: | 78926 |
| All_trans: | MGI:1926176 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_001190406 |
| Entrez ID: | 78926 |
| Nearest Unigene: | Mm.44591 |
| Nearest Refseq: | NM_030228 |
| Nearest Ensembl: | ENSMUSG00000034201 |
| Gene Name: | growth arrest-specific 2 like 1 |
| Gene Alias: | 4930500E24Rik|D0Jmb1|Gar22|TU-71.1 |
| Gene Description: | growth arrest-specific 2 like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -81(GCCCCTTTAAGA,-,0.00),-79(CCCTTTAAGAGC,+,0.00),-79(CCCTTTAAGAGC,-,0.00),-78(CCTTTAAGAGCG,+,0.00) |
