Difference between revisions of "TSS:Mm 100824.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK141321:102 BC138464:105 BC138465:105 AK081707:108 NM_032396:113 uc007hwh.1:113 BC082546:113 ENSMUST00000020662.14:165 AB059617:165 BC049771:189 |chr=c...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Kremen= |
| + | |Krm1= | ||
| + | |all_trans=MGI:1933988 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-128 | |distance_to_tss=-128 | ||
|end=5261754 | |end=5261754 | ||
| + | |end_of_center_position=5261739 | ||
|entrez_id=84035 | |entrez_id=84035 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
| − | |gene_alias=AV002070 | + | |gene_alias=AV002070{{!}}Kremen{{!}}Krm1 |
|gene_description=kringle containing transmembrane protein 1 | |gene_description=kringle containing transmembrane protein 1 | ||
|gene_id=84035 | |gene_id=84035 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_032396 | |nearest_refseq=NM_032396 | ||
|nearest_unigene=Mm.209989 | |nearest_unigene=Mm.209989 | ||
| − | |num_trans= | + | |num_trans=84035 |
|species=mouse | |species=mouse | ||
|start=5261722 | |start=5261722 | ||
| + | |start_of_center_position=5261738 | ||
|strand=- | |strand=- | ||
|transcript_name=AK141321 | |transcript_name=AK141321 | ||
Latest revision as of 10:46, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5261738 |
|---|---|
| End of the center position in the TSS region: | 5261739 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK141321 |
|---|---|
| Distance: | 102 |
| Num_trans: | 84035 |
| All_trans: | MGI:1933988 |
TATA-Box annotation
| Distance to TSS: | -128 |
|---|---|
| Nearest PromoterID: | NM_032396 |
| Entrez ID: | 84035 |
| Nearest Unigene: | Mm.209989 |
| Nearest Refseq: | NM_032396 |
| Nearest Ensembl: | ENSMUSG00000020393 |
| Gene Name: | kringle containing transmembrane protein 1 |
| Gene Alias: | AV002070|Kremen|Krm1 |
| Gene Description: | kringle containing transmembrane protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
