Difference between revisions of "TSS:Mm 100825.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK142465:-4 DQ688589:-193 BC019575:335 |chr=chr11 |cpg_percent=0 |distance=-4 |distance_to_tss=-15954 |end=5277567 |entrez_id=84035 |gc_percent=0.353234...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Kremen= |
| + | |Krm1= | ||
| + | |all_trans=MGI:3039616 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-15954 | |distance_to_tss=-15954 | ||
|end=5277567 | |end=5277567 | ||
| + | |end_of_center_position=5277565 | ||
|entrez_id=84035 | |entrez_id=84035 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
| − | |gene_alias=AV002070 | + | |gene_alias=AV002070{{!}}Kremen{{!}}Krm1 |
|gene_description=kringle containing transmembrane protein 1 | |gene_description=kringle containing transmembrane protein 1 | ||
|gene_id=407821 | |gene_id=407821 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_032396 | |nearest_refseq=NM_032396 | ||
|nearest_unigene=Mm.209989 | |nearest_unigene=Mm.209989 | ||
| − | |num_trans= | + | |num_trans=407821 |
|species=mouse | |species=mouse | ||
|start=5277561 | |start=5277561 | ||
| + | |start_of_center_position=5277564 | ||
|strand=- | |strand=- | ||
|transcript_name=AK142465 | |transcript_name=AK142465 | ||
Latest revision as of 10:46, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5277564 |
|---|---|
| End of the center position in the TSS region: | 5277565 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK142465 |
|---|---|
| Distance: | -4 |
| Num_trans: | 407821 |
| All_trans: | MGI:3039616 |
TATA-Box annotation
| Distance to TSS: | -15954 |
|---|---|
| Nearest PromoterID: | NM_032396 |
| Entrez ID: | 84035 |
| Nearest Unigene: | Mm.209989 |
| Nearest Refseq: | NM_032396 |
| Nearest Ensembl: | ENSMUSG00000020393 |
| Gene Name: | zinc and ring finger 3 |
| Gene Alias: | AV002070|Kremen|Krm1 |
| Gene Description: | kringle containing transmembrane protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
