Difference between revisions of "TSS:Mm 10083.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 5: | Line 5: | ||
|Cr-2= | |Cr-2= | ||
|Cr1= | |Cr1= | ||
| − | |all_trans= | + | |all_trans=MGI:88489 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
|distance=57 | |distance=57 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-59 |
|end=195176783 | |end=195176783 | ||
|end_of_center_position=195176778 | |end_of_center_position=195176778 | ||
|entrez_id=12902 | |entrez_id=12902 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| − | |gene_alias=C3DR | + | |gene_alias=C3DR{{!}}CD21{{!}}CD35{{!}}Cr-1{{!}}Cr-2{{!}}Cr1 |
|gene_description=complement receptor 2 | |gene_description=complement receptor 2 | ||
|gene_id=12902 | |gene_id=12902 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_007758 | |nearest_refseq=NM_007758 | ||
|nearest_unigene=Mm.235387 | |nearest_unigene=Mm.235387 | ||
| − | |num_trans= | + | |num_trans=12902 |
|species=mouse | |species=mouse | ||
|start=195176772 | |start=195176772 | ||
|start_of_center_position=195176777 | |start_of_center_position=195176777 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=27(TGCTATTTAAGG,-,0.00) |
|transcript_name=ENSMUST00000195120.5 | |transcript_name=ENSMUST00000195120.5 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_10083.1 | |tss_id=mm_10083.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9DC83 |
}} | }} | ||
Latest revision as of 10:47, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 195176777 |
|---|---|
| End of the center position in the TSS region: | 195176778 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000195120.5 |
|---|---|
| Distance: | 57 |
| Num_trans: | 12902 |
| All_trans: | MGI:88489 |
TATA-Box annotation
| Distance to TSS: | -59 |
|---|---|
| Nearest PromoterID: | NM_007758 |
| Entrez ID: | 12902 |
| Nearest Unigene: | Mm.235387 |
| Nearest Refseq: | NM_007758 |
| Nearest Ensembl: | ENSMUSG00000026616 |
| Gene Name: | complement receptor 2 |
| Gene Alias: | C3DR|CD21|CD35|Cr-1|Cr-2|Cr1 |
| Gene Description: | complement receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 27(TGCTATTTAAGG,-,0.00) |
