Difference between revisions of "TSS:Mm 100831.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000109867.7:-24 ENSMUST00000143746.2:-24 NM_001080924:-24 uc007hwj.2:-24 uc007hwl.1:-24 AK163639:-24 |chr=chr11 |cpg_percent=0.16 |distance=-24...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:3039616 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=46 | |distance_to_tss=46 | ||
|end=5444823 | |end=5444823 | ||
| + | |end_of_center_position=5444802 | ||
|entrez_id=407821 | |entrez_id=407821 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_001080924 | |nearest_refseq=NM_001080924 | ||
|nearest_unigene=Mm.216313 | |nearest_unigene=Mm.216313 | ||
| − | |num_trans= | + | |num_trans=407821 |
|species=mouse | |species=mouse | ||
|start=5444779 | |start=5444779 | ||
| + | |start_of_center_position=5444801 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000109867.7 ENSMUST00000143746.2 | + | |transcript_name=ENSMUST00000109867.7 ENSMUST00000143746.2 AK163639 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100831.1 | |tss_id=mm_100831.1 | ||
Latest revision as of 10:47, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5444801 |
|---|---|
| End of the center position in the TSS region: | 5444802 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000109867.7 ENSMUST00000143746.2 AK163639 |
|---|---|
| Distance: | -24 |
| Num_trans: | 407821 |
| All_trans: | MGI:3039616 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NM_001080924 |
| Entrez ID: | 407821 |
| Nearest Unigene: | Mm.216313 |
| Nearest Refseq: | NM_001080924 |
| Nearest Ensembl: | ENSMUSG00000041961 |
| Gene Name: | zinc and ring finger 3 |
| Gene Alias: | Gm1167 |
| Gene Description: | zinc and ring finger 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
