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Difference between revisions of "TSS:Mm 100836.1"

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(Created page with "{{TSSDetail |all_trans=ENSMUST00000020776.4:0 NM_134033:0 uc007hwp.2:0 BC018601:0 BC059888:6 BC034558:23 uc056yjl.1:381 AK155948:381 |chr=chr11 |cpg_percent=0.07 |distance=0 |...")
 
 
(2 intermediate revisions by the same user not shown)
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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000020776.4:0 NM_134033:0 uc007hwp.2:0 BC018601:0 BC059888:6 BC034558:23 uc056yjl.1:381 AK155948:381
+
|1700026O03Rik=
 +
|AU018638=
 +
|AU042822=
 +
|AV173073=
 +
|BC018601=
 +
|all_trans=MGI:2144383
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.07
 
|cpg_percent=0.07
Line 6: Line 11:
 
|distance_to_tss=19
 
|distance_to_tss=19
 
|end=5542219
 
|end=5542219
 +
|end_of_center_position=5542199
 
|entrez_id=104479
 
|entrez_id=104479
 
|gc_percent=0.606965
 
|gc_percent=0.606965
|gene_alias=1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601
+
|gene_alias=1110004K02Rik{{!}}1700026O03Rik{{!}}AU018638{{!}}AU042822{{!}}AV173073{{!}}BC018601
 
|gene_description=coiled-coil domain containing 117
 
|gene_description=coiled-coil domain containing 117
 
|gene_id=104479
 
|gene_id=104479
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|nearest_refseq=NM_134033
 
|nearest_refseq=NM_134033
 
|nearest_unigene=Mm.210403
 
|nearest_unigene=Mm.210403
|num_trans=8
+
|num_trans=104479
 
|species=mouse
 
|species=mouse
 
|start=5542177
 
|start=5542177
 +
|start_of_center_position=5542198
 
|strand=-
 
|strand=-
|transcript_name=ENSMUST00000020776.4 NM_134033 uc007hwp.2 BC018601
+
|transcript_name=ENSMUST00000020776.4 BC018601
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=mm_100836.1
 
|tss_id=mm_100836.1

Latest revision as of 10:47, 26 July 2021

Basic information about the TSS


TSS ID:mm_100836.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:5542177
End:5542219
Strand:-
TSS Score:1
Start of the center position in the TSS region:5542198
End of the center position in the TSS region:5542199



Gene and protein annotation


Transcript_name:ENSMUST00000020776.4 BC018601
Distance:0
GeneID:104479
HGNC/MGI_ID:MGI:2144383
UniProt_ID:Q6PB51
Gene_name:coiled-coil domain containing 117
Gene_symbol:Ccdc117
Gene_synonyms:1110004K02Rik 1700026O03Rik
Gene_source:MGI:2144383



Transcript annotation


Transcript_name:ENSMUST00000020776.4 BC018601
Distance:0
Num_trans:104479
All_trans:MGI:2144383



TATA-Box annotation


Distance to TSS:19
Nearest PromoterID:NM_134033
Entrez ID:104479
Nearest Unigene:Mm.210403
Nearest Refseq:NM_134033
Nearest Ensembl:ENSMUSG00000020482
Gene Name:coiled-coil domain containing 117
Gene Alias:1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601
Gene Description:coiled-coil domain containing 117
Gene Type:protein-coding
CpG%:0.07
GC%:0.606965
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):