Difference between revisions of "TSS:Mm 100837.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_134033:10 uc007hwp.2:10 ENSMUST00000020776.4:40 BC018601:40 BC059888:55 BC034558:72 uc056yjl.1:430 AK155948:430 |chr=chr11 |cpg_percent=0.065 |distan...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_134033 | + | |1700026O03Rik= |
| + | |AU018638= | ||
| + | |AU042822= | ||
| + | |AV173073= | ||
| + | |BC018601= | ||
| + | |all_trans=NM_134033:10 ENSMUST00000020776.4:40 BC018601:40 BC059888:55 BC034558:72 AK155948:430 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 6: | Line 11: | ||
|distance_to_tss=-18 | |distance_to_tss=-18 | ||
|end=5542243 | |end=5542243 | ||
| + | |end_of_center_position=5542235 | ||
|entrez_id=104479 | |entrez_id=104479 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=1110004K02Rik | + | |gene_alias=1110004K02Rik{{!}}1700026O03Rik{{!}}AU018638{{!}}AU042822{{!}}AV173073{{!}}BC018601 |
|gene_description=coiled-coil domain containing 117 | |gene_description=coiled-coil domain containing 117 | ||
|gene_id=104479 | |gene_id=104479 | ||
| Line 21: | Line 27: | ||
|nearest_refseq=NM_134033 | |nearest_refseq=NM_134033 | ||
|nearest_unigene=Mm.210403 | |nearest_unigene=Mm.210403 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=5542226 | |start=5542226 | ||
| + | |start_of_center_position=5542234 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_134033 | + | |transcript_name=NM_134033.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100837.1 | |tss_id=mm_100837.1 | ||
Latest revision as of 10:47, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5542234 |
|---|---|
| End of the center position in the TSS region: | 5542235 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_134033.2 |
|---|---|
| Distance: | 10 |
| Num_trans: | 6 |
| All_trans: | NM_134033:10 ENSMUST00000020776.4:40 BC018601:40 BC059888:55 BC034558:72 AK155948:430 |
TATA-Box annotation
| Distance to TSS: | -18 |
|---|---|
| Nearest PromoterID: | NM_134033 |
| Entrez ID: | 104479 |
| Nearest Unigene: | Mm.210403 |
| Nearest Refseq: | NM_134033 |
| Nearest Ensembl: | ENSMUSG00000020482 |
| Gene Name: | coiled-coil domain containing 117 |
| Gene Alias: | 1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601 |
| Gene Description: | coiled-coil domain containing 117 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
