Difference between revisions of "TSS:Mm 100912.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|Gm243= | |Gm243= | ||
| − | |all_trans=NM_207242 | + | |all_trans=NM_207242:-3 ENSMUST00000004505.2:32 AK078947:32 AY437866:52 BC131789:52 BC131788:53 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 10: | Line 10: | ||
|entrez_id=237636 | |entrez_id=237636 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=9130221N23Rik | + | |gene_alias=9130221N23Rik{{!}}Gm243 |
| − | |gene_description=NPC1 | + | |gene_description=NPC1 like intracellular cholesterol transporter 1 |
|gene_id=237636 | |gene_id=237636 | ||
| − | |gene_name=NPC1 | + | |gene_name=NPC1 like intracellular cholesterol transporter 1 |
|gene_source=MGI:2685089 | |gene_source=MGI:2685089 | ||
|gene_symbol=Npc1l1 | |gene_symbol=Npc1l1 | ||
| − | |gene_synonyms= | + | |gene_synonyms=9130221N23Rik Niemann-Pick_disease,_type_C1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2685089 | |hgnc_mgi_id=MGI:2685089 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_207242 | |nearest_refseq=NM_207242 | ||
|nearest_unigene=Mm.212492 | |nearest_unigene=Mm.212492 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=6230174 | |start=6230174 | ||
|start_of_center_position=6230208 | |start_of_center_position=6230208 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_207242 | + | |transcript_name=NM_207242.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100912.1 | |tss_id=mm_100912.1 | ||
Latest revision as of 10:48, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6230208 |
|---|---|
| End of the center position in the TSS region: | 6230209 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_207242.2 |
|---|---|
| Distance: | -3 |
| Num_trans: | 6 |
| All_trans: | NM_207242:-3 ENSMUST00000004505.2:32 AK078947:32 AY437866:52 BC131789:52 BC131788:53 |
TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NM_207242 |
| Entrez ID: | 237636 |
| Nearest Unigene: | Mm.212492 |
| Nearest Refseq: | NM_207242 |
| Nearest Ensembl: | ENSMUSG00000020447 |
| Gene Name: | NPC1 like intracellular cholesterol transporter 1 |
| Gene Alias: | 9130221N23Rik|Gm243 |
| Gene Description: | NPC1 like intracellular cholesterol transporter 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
