Difference between revisions of "TSS:Mm 100918.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK085849:287 |chr=chr11 |cpg_percent=0.11 |distance=287 |distance_to_tss=-418 |end=6292149 |entrez_id=18293 |gc_percent=0.686567 |gene_alias=2210403E04R...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |2210412K19Rik= |
| + | |AA409584= | ||
| + | |all_trans=MGI:5825907 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |d1401= | ||
|distance=287 | |distance=287 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-30 |
|end=6292149 | |end=6292149 | ||
| + | |end_of_center_position=6292141 | ||
|entrez_id=18293 | |entrez_id=18293 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=2210403E04Rik | + | |gene_alias=2210403E04Rik{{!}}2210412K19Rik{{!}}AA409584{{!}}d1401{{!}}mKIAA4192 |
|gene_description=oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) | |gene_description=oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) | ||
| − | |gene_name= | + | |gene_id=108167883 |
| + | |gene_name=predicted gene, 46270 | ||
| + | |gene_source=MGI:5825907 | ||
| + | |gene_symbol=Gm46270 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=MGI:5825907 | ||
| + | |mKIAA4192= | ||
|nearest_ensembl=ENSMUSG00000020456 | |nearest_ensembl=ENSMUSG00000020456 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361904 |
|nearest_refseq=NM_010956 | |nearest_refseq=NM_010956 | ||
|nearest_unigene=Mm.276348 | |nearest_unigene=Mm.276348 | ||
| − | |num_trans= | + | |num_trans=108167883 |
|species=mouse | |species=mouse | ||
|start=6292131 | |start=6292131 | ||
| + | |start_of_center_position=6292140 | ||
|strand=- | |strand=- | ||
|transcript_name=AK085849 | |transcript_name=AK085849 | ||
| Line 24: | Line 35: | ||
|tss_id=mm_100918.1 | |tss_id=mm_100918.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 10:49, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6292140 |
|---|---|
| End of the center position in the TSS region: | 6292141 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK085849 |
|---|---|
| Distance: | 287 |
| Num_trans: | 108167883 |
| All_trans: | MGI:5825907 |
TATA-Box annotation
| Distance to TSS: | -30 |
|---|---|
| Nearest PromoterID: | NM_001361904 |
| Entrez ID: | 18293 |
| Nearest Unigene: | Mm.276348 |
| Nearest Refseq: | NM_010956 |
| Nearest Ensembl: | ENSMUSG00000020456 |
| Gene Name: | predicted gene, 46270 |
| Gene Alias: | 2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192 |
| Gene Description: | oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
