Difference between revisions of "TSS:Mm 100945.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|OTTMUSG00000005115= | |OTTMUSG00000005115= | ||
| − | |all_trans= | + | |all_trans=MGI:3650059 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=4 |
|distance_to_tss=-35 | |distance_to_tss=-35 | ||
|end=6528807 | |end=6528807 | ||
| Line 12: | Line 12: | ||
|gene_alias=Gm11974 | |gene_alias=Gm11974 | ||
|gene_description=small nucleolar RNA host gene 15 | |gene_description=small nucleolar RNA host gene 15 | ||
| − | |gene_id= | + | |gene_id= |
|gene_name=small nucleolar RNA host gene 15 | |gene_name=small nucleolar RNA host gene 15 | ||
|gene_source=MGI:3650059 | |gene_source=MGI:3650059 | ||
|gene_symbol=Snhg15 | |gene_symbol=Snhg15 | ||
| − | |gene_synonyms=Gm11974 | + | |gene_synonyms=Gm11974 SAM |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=MGI:3650059 | |hgnc_mgi_id=MGI:3650059 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_045893 | |nearest_refseq=NR_045893 | ||
|nearest_unigene=Mm.459507 | |nearest_unigene=Mm.459507 | ||
| − | |num_trans= | + | |num_trans= |
|species=mouse | |species=mouse | ||
|start=6528782 | |start=6528782 | ||
|start_of_center_position=6528794 | |start_of_center_position=6528794 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000147762. | + | |transcript_name=ENSMUST00000147762.8 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100945.1 | |tss_id=mm_100945.1 | ||
Latest revision as of 10:49, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6528794 |
|---|---|
| End of the center position in the TSS region: | 6528795 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000147762.8 |
|---|---|
| Distance: | 4 |
| Num_trans: | |
| All_trans: | MGI:3650059 |
TATA-Box annotation
| Distance to TSS: | -35 |
|---|---|
| Nearest PromoterID: | NR_045893 |
| Entrez ID: | 100041286 |
| Nearest Unigene: | Mm.459507 |
| Nearest Refseq: | NR_045893 |
| Nearest Ensembl: | ENSMUSG00000085156 |
| Gene Name: | small nucleolar RNA host gene 15 |
| Gene Alias: | Gm11974 |
| Gene Description: | small nucleolar RNA host gene 15 |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
