Difference between revisions of "TSS:Mm 100964.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_011709:0 uc007hzb.1:0 AK142655:0 AK164735:0 BC132280:0 BC132282:0 ENSMUST00000102910.3:4 V00856:4 BC026780:13 BC069895:13 |chr=chr11 |cpg_percent=0.0...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:98943 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
|end=6638655 | |end=6638655 | ||
| + | |end_of_center_position=6638648 | ||
|entrez_id=22373 | |entrez_id=22373 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_011709 | |nearest_refseq=NM_011709 | ||
|nearest_unigene=Mm.268094 | |nearest_unigene=Mm.268094 | ||
| − | |num_trans= | + | |num_trans=22373 |
|species=mouse | |species=mouse | ||
|start=6638640 | |start=6638640 | ||
| + | |start_of_center_position=6638647 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(TCCTTTAAATGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=AK142655 AK164735 BC132280 BC132282 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100964.1 | |tss_id=mm_100964.1 | ||
Latest revision as of 10:50, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6638647 |
|---|---|
| End of the center position in the TSS region: | 6638648 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK142655 AK164735 BC132280 BC132282 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22373 |
| All_trans: | MGI:98943 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_011709 |
| Entrez ID: | 22373 |
| Nearest Unigene: | Mm.268094 |
| Nearest Refseq: | NM_011709 |
| Nearest Ensembl: | ENSMUSG00000000381 |
| Gene Name: | whey acidic protein |
| Gene Alias: | - |
| Gene Description: | whey acidic protein |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(TCCTTTAAATGC,-,0.00) |
