Difference between revisions of "TSS:Mm 101068.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC139450:-145 BC139453:-145 BC145628:-145 ENSMUST00000020413.3:-165 D17569:-165 NM_015785:-176 NM_001185153:-176 uc011xrm.1:-176 uc007iae.2:-176 |chr=ch...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Iam38= |
| + | |Sp38= | ||
| + | |all_trans=MGI:1855701 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=192 | |distance_to_tss=192 | ||
|end=11462243 | |end=11462243 | ||
| + | |end_of_center_position=11462227 | ||
|entrez_id=53604 | |entrez_id=53604 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=4930486K01Rik | + | |gene_alias=4930486K01Rik{{!}}Iam38{{!}}Sp38 |
|gene_description=zona pellucida binding protein | |gene_description=zona pellucida binding protein | ||
|gene_id=53604 | |gene_id=53604 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=MGI:1855701 | |hgnc_mgi_id=MGI:1855701 | ||
|nearest_ensembl=ENSMUSG00000020193 | |nearest_ensembl=ENSMUSG00000020193 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001185153 |
|nearest_refseq=NM_015785 | |nearest_refseq=NM_015785 | ||
|nearest_unigene=Mm.9500 | |nearest_unigene=Mm.9500 | ||
| − | |num_trans= | + | |num_trans=53604 |
|species=mouse | |species=mouse | ||
|start=11462210 | |start=11462210 | ||
| + | |start_of_center_position=11462226 | ||
|strand=- | |strand=- | ||
|transcript_name=BC139450 BC139453 BC145628 | |transcript_name=BC139450 BC139453 BC145628 | ||
| Line 29: | Line 33: | ||
|tss_id=mm_101068.1 | |tss_id=mm_101068.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B7ZP49 |
}} | }} | ||
Latest revision as of 10:52, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11462226 |
|---|---|
| End of the center position in the TSS region: | 11462227 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC139450 BC139453 BC145628 |
|---|---|
| Distance: | -145 |
| Num_trans: | 53604 |
| All_trans: | MGI:1855701 |
TATA-Box annotation
| Distance to TSS: | 192 |
|---|---|
| Nearest PromoterID: | NM_001185153 |
| Entrez ID: | 53604 |
| Nearest Unigene: | Mm.9500 |
| Nearest Refseq: | NM_015785 |
| Nearest Ensembl: | ENSMUSG00000020193 |
| Gene Name: | zona pellucida binding protein |
| Gene Alias: | 4930486K01Rik|Iam38|Sp38 |
| Gene Description: | zona pellucida binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
