Difference between revisions of "TSS:Mm 101070.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|Iam38= | |Iam38= | ||
|Sp38= | |Sp38= | ||
| − | |all_trans= | + | |all_trans=NM_001185153:0 NM_015785:0 ENSMUST00000020413.3:8 D17569:8 BC139450:28 BC139453:28 BC145628:28 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 11: | Line 11: | ||
|entrez_id=53604 | |entrez_id=53604 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=4930486K01Rik | + | |gene_alias=4930486K01Rik{{!}}Iam38{{!}}Sp38 |
|gene_description=zona pellucida binding protein | |gene_description=zona pellucida binding protein | ||
|gene_id=53604 | |gene_id=53604 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1855701 | |hgnc_mgi_id=MGI:1855701 | ||
|nearest_ensembl=ENSMUSG00000020193 | |nearest_ensembl=ENSMUSG00000020193 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015785 |
|nearest_refseq=NM_015785 | |nearest_refseq=NM_015785 | ||
|nearest_unigene=Mm.9500 | |nearest_unigene=Mm.9500 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=11462415 | |start=11462415 | ||
|start_of_center_position=11462420 | |start_of_center_position=11462420 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_015785 NM_001185153 | + | |transcript_name=NM_015785.2 NM_001185153.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101070.1 | |tss_id=mm_101070.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B7ZP49 | + | |uniprot_id=B7ZP49 Q62522 |
}} | }} | ||
Latest revision as of 10:52, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11462420 |
|---|---|
| End of the center position in the TSS region: | 11462421 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_015785.2 NM_001185153.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | NM_001185153:0 NM_015785:0 ENSMUST00000020413.3:8 D17569:8 BC139450:28 BC139453:28 BC145628:28 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_015785 |
| Entrez ID: | 53604 |
| Nearest Unigene: | Mm.9500 |
| Nearest Refseq: | NM_015785 |
| Nearest Ensembl: | ENSMUSG00000020193 |
| Gene Name: | zona pellucida binding protein |
| Gene Alias: | 4930486K01Rik|Iam38|Sp38 |
| Gene Description: | zona pellucida binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
