Difference between revisions of "TSS:Mm 101130.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000174874.7:0 NM_001282994:0 uc033ftw.1:0 AK122334:0 |chr=chr11 |cpg_percent=0 |distance=0 |distance_to_tss=-5 |end=12412153 |entrez_id=12808 |...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:105056 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
|end=12412153 | |end=12412153 | ||
| + | |end_of_center_position=12412145 | ||
|entrez_id=12808 | |entrez_id=12808 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_172496 | |nearest_refseq=NM_172496 | ||
|nearest_unigene=Mm.22847 | |nearest_unigene=Mm.22847 | ||
| − | |num_trans= | + | |num_trans=12808 |
|species=mouse | |species=mouse | ||
|start=12412136 | |start=12412136 | ||
| + | |start_of_center_position=12412144 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(AGCTATATAAGA,-,0.00) |
| − | |transcript_name=ENSMUST00000174874.7 | + | |transcript_name=ENSMUST00000174874.7 AK122334 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_101130.1 | |tss_id=mm_101130.1 | ||
Latest revision as of 10:53, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 12412144 |
|---|---|
| End of the center position in the TSS region: | 12412145 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000174874.7 AK122334 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12808 |
| All_trans: | MGI:105056 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001282994 |
| Entrez ID: | 12808 |
| Nearest Unigene: | Mm.22847 |
| Nearest Refseq: | NM_172496 |
| Nearest Ensembl: | ENSMUSG00000020173 |
| Gene Name: | cordon-bleu WH2 repeat |
| Gene Alias: | - |
| Gene Description: | cordon-bleu WH2 repeat |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(AGCTATATAAGA,-,0.00) |
