Difference between revisions of "TSS:Mm 101136.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000046755.13:0 ENSMUST00000109651.8:0 NM_172496:0 NM_001282993:0 uc007ibd.2:0 uc007ibe.2:0 uc011xrp.1:0 uc011xrq.1:0 uc007ibf.2:0 AK147366:0 AK...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:105056 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=21 | |distance_to_tss=21 | ||
|end=12464997 | |end=12464997 | ||
| + | |end_of_center_position=12464940 | ||
|entrez_id=12808 | |entrez_id=12808 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_172496 | |nearest_refseq=NM_172496 | ||
|nearest_unigene=Mm.22847 | |nearest_unigene=Mm.22847 | ||
| − | |num_trans= | + | |num_trans=12808 |
|species=mouse | |species=mouse | ||
|start=12464881 | |start=12464881 | ||
| + | |start_of_center_position=12464939 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000046755.13 ENSMUST00000109651.8 | + | |transcript_name=ENSMUST00000046755.13 ENSMUST00000109651.8 AK147366 AK147633 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101136.1 | |tss_id=mm_101136.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=G5E8P4 Q5NBX1 | + | |uniprot_id=G5E8P4 Q5NBX1 |
}} | }} | ||
Latest revision as of 10:53, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 12464939 |
|---|---|
| End of the center position in the TSS region: | 12464940 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000046755.13 ENSMUST00000109651.8 AK147366 AK147633 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12808 |
| All_trans: | MGI:105056 |
TATA-Box annotation
| Distance to TSS: | 21 |
|---|---|
| Nearest PromoterID: | NM_172496 |
| Entrez ID: | 12808 |
| Nearest Unigene: | Mm.22847 |
| Nearest Refseq: | NM_172496 |
| Nearest Ensembl: | ENSMUSG00000020173 |
| Gene Name: | cordon-bleu WH2 repeat |
| Gene Alias: | - |
| Gene Description: | cordon-bleu WH2 repeat |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
