Difference between revisions of "TSS:Mm 101154.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |4930500E12Rik= |
| + | |Fabl= | ||
| + | |all_trans=MGI:1919985 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=175 | |distance_to_tss=175 | ||
|end=16951131 | |end=16951131 | ||
| + | |end_of_center_position=16951108 | ||
|entrez_id=72735 | |entrez_id=72735 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=2810442I21Rik | + | |gene_alias=2810442I21Rik{{!}}4930500E12Rik{{!}}Fabl |
|gene_description=Egfr long non-coding downstream RNA | |gene_description=Egfr long non-coding downstream RNA | ||
|gene_id=72735 | |gene_id=72735 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NR_015469 | |nearest_refseq=NR_015469 | ||
|nearest_unigene=Mm.268598 | |nearest_unigene=Mm.268598 | ||
| − | |num_trans= | + | |num_trans=72735 |
|species=mouse | |species=mouse | ||
|start=16951083 | |start=16951083 | ||
| + | |start_of_center_position=16951107 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-91(GGACTTAAAAGA,-,0.00) |
| − | |transcript_name=ENSMUST00000130392.7 ENSMUST00000139493.7 ENSMUST00000129735.7 ENSMUST00000142777 | + | |transcript_name=ENSMUST00000130392.7 ENSMUST00000139493.7 ENSMUST00000129735.7 ENSMUST00000142777.1 BC037766 AK013290 AK165613 AK141825 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101154.1 | |tss_id=mm_101154.1 | ||
Latest revision as of 10:54, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16951107 |
|---|---|
| End of the center position in the TSS region: | 16951108 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000130392.7 ENSMUST00000139493.7 ENSMUST00000129735.7 ENSMUST00000142777.1 BC037766 AK013290 AK165613 AK141825 |
|---|---|
| Distance: | 0 |
| Num_trans: | 72735 |
| All_trans: | MGI:1919985 |
TATA-Box annotation
| Distance to TSS: | 175 |
|---|---|
| Nearest PromoterID: | NR_110421 |
| Entrez ID: | 72735 |
| Nearest Unigene: | Mm.268598 |
| Nearest Refseq: | NR_015469 |
| Nearest Ensembl: | |
| Gene Name: | Egfr long non-coding downstream RNA |
| Gene Alias: | 2810442I21Rik|4930500E12Rik|Fabl |
| Gene Description: | Egfr long non-coding downstream RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.05 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -91(GGACTTAAAAGA,-,0.00) |
