Difference between revisions of "TSS:Mm 101201.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|Evi8= | |Evi8= | ||
| − | |all_trans= | + | |all_trans=MGI:104717 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 10: | Line 10: | ||
|entrez_id=17268 | |entrez_id=17268 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=C530044H18Rik | + | |gene_alias=C530044H18Rik{{!}}Evi8 |
|gene_description=Meis homeobox 1 | |gene_description=Meis homeobox 1 | ||
|gene_id=17268 | |gene_id=17268 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_010789 | |nearest_refseq=NM_010789 | ||
|nearest_unigene=Mm.356578 | |nearest_unigene=Mm.356578 | ||
| − | |num_trans= | + | |num_trans=17268 |
|species=mouse | |species=mouse | ||
|start=19018817 | |start=19018817 | ||
|start_of_center_position=19018822 | |start_of_center_position=19018822 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-56(CCTTTAAGACAA,+,0.00) |
|transcript_name=AK132298 | |transcript_name=AK132298 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 10:55, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 19018822 |
|---|---|
| End of the center position in the TSS region: | 19018823 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK132298 |
|---|---|
| Distance: | 69 |
| Num_trans: | 17268 |
| All_trans: | MGI:104717 |
TATA-Box annotation
| Distance to TSS: | 146 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis homeobox 1 |
| Gene Alias: | C530044H18Rik|Evi8 |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -56(CCTTTAAGACAA,+,0.00) |
