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Difference between revisions of "TSS:Mm 101248.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000035350.11:345 NM_001252503:378 NM_001290545:378 NM_181411:378 AK030572:435 AK042681:440 BC052036:450 AK138793:457 ENSMUST00000177543.7:479 AK029681:479
+
|all_trans=MGI:1923012
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.05
 
|cpg_percent=0.05
Line 22: Line 22:
 
|nearest_refseq=NM_181411
 
|nearest_refseq=NM_181411
 
|nearest_unigene=Mm.356580
 
|nearest_unigene=Mm.356580
|num_trans=10
+
|num_trans=216549
 
|species=mouse
 
|species=mouse
 
|start=20741933
 
|start=20741933

Latest revision as of 10:56, 26 July 2021

Basic information about the TSS


TSS ID:mm_101248.1
Species:mouse
Chr:chr11
TSS Classification:no
Start:20741933
End:20741944
Strand:-
TSS Score:1
Start of the center position in the TSS region:20741938
End of the center position in the TSS region:20741939



Gene and protein annotation


Transcript_name:ENSMUST00000035350.11
Distance:345
GeneID:216549
HGNC/MGI_ID:MGI:1923012
UniProt_ID:Q80WT5
Gene_name:aftiphilin
Gene_symbol:Aftph
Gene_synonyms:9130023F12Rik
Gene_source:MGI:1923012



Transcript annotation


Transcript_name:ENSMUST00000035350.11
Distance:345
Num_trans:216549
All_trans:MGI:1923012



TATA-Box annotation


Distance to TSS:-383
Nearest PromoterID:NM_001252503
Entrez ID:216549
Nearest Unigene:Mm.356580
Nearest Refseq:NM_181411
Nearest Ensembl:ENSMUSG00000049659
Gene Name:aftiphilin
Gene Alias:-
Gene Description:aftiphilin
Gene Type:protein-coding
CpG%:0.05
GC%:0.512438
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):