Difference between revisions of "TSS:Mm 101248.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000035350.11:345 NM_001252503:378 NM_001290545:378 NM_181411:378 uc056yjx.1:378 uc007idh.3:378 uc011xry.3:378 uc007idi.3:378 AK030572:435 AK042...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1923012 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-383 | |distance_to_tss=-383 | ||
|end=20741944 | |end=20741944 | ||
| + | |end_of_center_position=20741939 | ||
|entrez_id=216549 | |entrez_id=216549 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=MGI:1923012 | |hgnc_mgi_id=MGI:1923012 | ||
|nearest_ensembl=ENSMUSG00000049659 | |nearest_ensembl=ENSMUSG00000049659 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001252503 |
|nearest_refseq=NM_181411 | |nearest_refseq=NM_181411 | ||
|nearest_unigene=Mm.356580 | |nearest_unigene=Mm.356580 | ||
| − | |num_trans= | + | |num_trans=216549 |
|species=mouse | |species=mouse | ||
|start=20741933 | |start=20741933 | ||
| + | |start_of_center_position=20741938 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000035350.11 | |transcript_name=ENSMUST00000035350.11 | ||
Latest revision as of 10:56, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 20741938 |
|---|---|
| End of the center position in the TSS region: | 20741939 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000035350.11 |
|---|---|
| Distance: | 345 |
| Num_trans: | 216549 |
| All_trans: | MGI:1923012 |
TATA-Box annotation
| Distance to TSS: | -383 |
|---|---|
| Nearest PromoterID: | NM_001252503 |
| Entrez ID: | 216549 |
| Nearest Unigene: | Mm.356580 |
| Nearest Refseq: | NM_181411 |
| Nearest Ensembl: | ENSMUSG00000049659 |
| Gene Name: | aftiphilin |
| Gene Alias: | - |
| Gene Description: | aftiphilin |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
