Difference between revisions of "TSS:Mm 101264.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000118357.1:90 |chr=chr11 |cpg_percent=0.005 |distance=90 |distance_to_tss=-31990 |end=21207049 |entrez_id=245944 |gc_percent=0.432836 |gene_al...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Vps54l= |
| + | |all_trans=MGI:3651597 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-31990 | |distance_to_tss=-31990 | ||
|end=21207049 | |end=21207049 | ||
| + | |end_of_center_position=21207043 | ||
|entrez_id=245944 | |entrez_id=245944 | ||
|gc_percent=0.432836 | |gc_percent=0.432836 | ||
| − | |gene_alias=Hcc8 | + | |gene_alias=Hcc8{{!}}Vps54l{{!}}mSLP8{{!}}wr |
|gene_description=VPS54 GARP complex subunit | |gene_description=VPS54 GARP complex subunit | ||
|gene_id= | |gene_id= | ||
| Line 17: | Line 19: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:3651597 | |hgnc_mgi_id=MGI:3651597 | ||
| + | |mSLP8= | ||
|nearest_ensembl=ENSMUSG00000020128 | |nearest_ensembl=ENSMUSG00000020128 | ||
|nearest_promoter_id=NM_139061 | |nearest_promoter_id=NM_139061 | ||
|nearest_refseq=NM_139061 | |nearest_refseq=NM_139061 | ||
|nearest_unigene=Mm.170103 | |nearest_unigene=Mm.170103 | ||
| − | |num_trans= | + | |num_trans= |
|species=mouse | |species=mouse | ||
|start=21207035 | |start=21207035 | ||
| + | |start_of_center_position=21207042 | ||
|strand=- | |strand=- | ||
|transcript_name=ENSMUST00000118357.1 | |transcript_name=ENSMUST00000118357.1 | ||
| Line 30: | Line 34: | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
| + | |wr= | ||
}} | }} | ||
Latest revision as of 10:56, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 21207042 |
|---|---|
| End of the center position in the TSS region: | 21207043 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000118357.1 |
|---|---|
| Distance: | 90 |
| Num_trans: | |
| All_trans: | MGI:3651597 |
TATA-Box annotation
| Distance to TSS: | -31990 |
|---|---|
| Nearest PromoterID: | NM_139061 |
| Entrez ID: | 245944 |
| Nearest Unigene: | Mm.170103 |
| Nearest Refseq: | NM_139061 |
| Nearest Ensembl: | ENSMUSG00000020128 |
| Gene Name: | predicted gene 12040 |
| Gene Alias: | Hcc8|Vps54l|mSLP8|wr |
| Gene Description: | VPS54 GARP complex subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.432836 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
