Difference between revisions of "TSS:Mm 10127.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|AA959793= | |AA959793= | ||
|AI132312= | |AI132312= | ||
| − | |all_trans= | + | |all_trans=MGI:1913790 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 12: | Line 12: | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.492537 | |gc_percent=0.492537 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik{{!}}AA589595{{!}}AA959793{{!}}AI132312 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 107, member B |
|gene_id=66540 | |gene_id=66540 | ||
| − | |gene_name= | + | |gene_name=family with sequence similarity 107, member B |
|gene_source=MGI:1913790 | |gene_source=MGI:1913790 | ||
|gene_symbol=Fam107b | |gene_symbol=Fam107b | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_025626 | |nearest_refseq=NM_025626 | ||
|nearest_unigene=Mm.277864 | |nearest_unigene=Mm.277864 | ||
| − | |num_trans= | + | |num_trans=66540 |
|species=mouse | |species=mouse | ||
|start=3770673 | |start=3770673 | ||
|start_of_center_position=3770677 | |start_of_center_position=3770677 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-55(TCTTTTAGACAG,+,0.00) |
|transcript_name=ENSMUST00000177037.1 | |transcript_name=ENSMUST00000177037.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 10:56, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3770677 |
|---|---|
| End of the center position in the TSS region: | 3770678 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000177037.1 |
|---|---|
| Distance: | 26 |
| Num_trans: | 66540 |
| All_trans: | MGI:1913790 |
TATA-Box annotation
| Distance to TSS: | 57220 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | family with sequence similarity 107, member B |
| Gene Alias: | 3110001A13Rik|AA589595|AA959793|AI132312 |
| Gene Description: | family with sequence similarity 107, member B |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.492537 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -55(TCTTTTAGACAG,+,0.00) |
