Difference between revisions of "TSS:Mm 101273.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|UGPase= | |UGPase= | ||
| − | |all_trans=NM_139297 | + | |all_trans=NM_139297:38 AK185393:142 BC061208:154 AK209798:187 AK196595:188 AK197624:188 ENSMUST00000102875.10:190 AF424698:190 AK033445:192 AK177085:407 AK214438:407 AK213550:-495 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 10: | Line 10: | ||
|entrez_id=216558 | |entrez_id=216558 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=UDPGP | + | |gene_alias=UDPGP{{!}}UGPase |
|gene_description=UDP-glucose pyrophosphorylase 2 | |gene_description=UDP-glucose pyrophosphorylase 2 | ||
|gene_id=216558 | |gene_id=216558 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_139297 | |nearest_refseq=NM_139297 | ||
|nearest_unigene=Mm.28877 | |nearest_unigene=Mm.28877 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=21370666 | |start=21370666 | ||
|start_of_center_position=21370669 | |start_of_center_position=21370669 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-46(GGCTATTTATGG,-,0.00),-44(CTATTTATGGGC,+,0.00) |
| − | |transcript_name=NM_139297 | + | |transcript_name=NM_139297.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101273.1 | |tss_id=mm_101273.1 | ||
Latest revision as of 10:56, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 21370669 |
|---|---|
| End of the center position in the TSS region: | 21370670 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_139297.6 |
|---|---|
| Distance: | 38 |
| Num_trans: | 12 |
| All_trans: | NM_139297:38 AK185393:142 BC061208:154 AK209798:187 AK196595:188 AK197624:188 ENSMUST00000102875.10:190 AF424698:190 AK033445:192 AK177085:407 AK214438:407 AK213550:-495 |
TATA-Box annotation
| Distance to TSS: | -41 |
|---|---|
| Nearest PromoterID: | NM_139297 |
| Entrez ID: | 216558 |
| Nearest Unigene: | Mm.28877 |
| Nearest Refseq: | NM_139297 |
| Nearest Ensembl: | ENSMUSG00000001891 |
| Gene Name: | UDP-glucose pyrophosphorylase 2 |
| Gene Alias: | UDPGP|UGPase |
| Gene Description: | UDP-glucose pyrophosphorylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -46(GGCTATTTATGG,-,0.00),-44(CTATTTATGGGC,+,0.00) |
