Difference between revisions of "TSS:Mm 101274.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_139297 | + | |UGPase= |
| + | |all_trans=NM_139297:50 AK185393:154 BC061208:166 AK209798:199 AK196595:200 AK197624:200 ENSMUST00000102875.10:202 AF424698:202 AK033445:204 AK177085:419 AK214438:419 AK213550:-479 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-55 | |distance_to_tss=-55 | ||
|end=21370689 | |end=21370689 | ||
| + | |end_of_center_position=21370684 | ||
|entrez_id=216558 | |entrez_id=216558 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=UDPGP | + | |gene_alias=UDPGP{{!}}UGPase |
|gene_description=UDP-glucose pyrophosphorylase 2 | |gene_description=UDP-glucose pyrophosphorylase 2 | ||
|gene_id=216558 | |gene_id=216558 | ||
| Line 21: | Line 23: | ||
|nearest_refseq=NM_139297 | |nearest_refseq=NM_139297 | ||
|nearest_unigene=Mm.28877 | |nearest_unigene=Mm.28877 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=21370678 | |start=21370678 | ||
| + | |start_of_center_position=21370683 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-32(GGCTATTTATGG,-,0.00),-30(CTATTTATGGGC,+,0.00) |
| − | |transcript_name=NM_139297 | + | |transcript_name=NM_139297.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101274.1 | |tss_id=mm_101274.1 | ||
Latest revision as of 10:56, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 21370683 |
|---|---|
| End of the center position in the TSS region: | 21370684 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_139297.6 |
|---|---|
| Distance: | 50 |
| Num_trans: | 12 |
| All_trans: | NM_139297:50 AK185393:154 BC061208:166 AK209798:199 AK196595:200 AK197624:200 ENSMUST00000102875.10:202 AF424698:202 AK033445:204 AK177085:419 AK214438:419 AK213550:-479 |
TATA-Box annotation
| Distance to TSS: | -55 |
|---|---|
| Nearest PromoterID: | NM_139297 |
| Entrez ID: | 216558 |
| Nearest Unigene: | Mm.28877 |
| Nearest Refseq: | NM_139297 |
| Nearest Ensembl: | ENSMUSG00000001891 |
| Gene Name: | UDP-glucose pyrophosphorylase 2 |
| Gene Alias: | UDPGP|UGPase |
| Gene Description: | UDP-glucose pyrophosphorylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(GGCTATTTATGG,-,0.00),-30(CTATTTATGGGC,+,0.00) |
