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Difference between revisions of "TSS:Mm 101274.1"

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{{TSSDetail
 
{{TSSDetail
 
|UGPase=
 
|UGPase=
|all_trans=NM_139297:50 uc007ids.4:50 AK185393:154 BC061208:166 AK209798:199 AK196595:200 AK197624:200 ENSMUST00000102875.10:202 AF424698:202 AK033445:204 BC023810:221 AK177085:419 AK214438:419 AK213550:-479
+
|all_trans=NM_139297:50 AK185393:154 BC061208:166 AK209798:199 AK196595:200 AK197624:200 ENSMUST00000102875.10:202 AF424698:202 AK033445:204 AK177085:419 AK214438:419 AK213550:-479
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.12
 
|cpg_percent=0.12
Line 10: Line 10:
 
|entrez_id=216558
 
|entrez_id=216558
 
|gc_percent=0.726368
 
|gc_percent=0.726368
|gene_alias=UDPGP
+
|gene_alias=UDPGP{{!}}UGPase
 
|gene_description=UDP-glucose pyrophosphorylase 2
 
|gene_description=UDP-glucose pyrophosphorylase 2
 
|gene_id=216558
 
|gene_id=216558
Line 23: Line 23:
 
|nearest_refseq=NM_139297
 
|nearest_refseq=NM_139297
 
|nearest_unigene=Mm.28877
 
|nearest_unigene=Mm.28877
|num_trans=14
+
|num_trans=12
 
|species=mouse
 
|species=mouse
 
|start=21370678
 
|start=21370678
 
|start_of_center_position=21370683
 
|start_of_center_position=21370683
 
|strand=-
 
|strand=-
|tata_box="-32(GGCTATTTATGG,-,0.00),-30(CTATTTATGGGC,+,0.00)"
+
|tata_box=-32(GGCTATTTATGG,-,0.00),-30(CTATTTATGGGC,+,0.00)
|transcript_name=NM_139297 uc007ids.4
+
|transcript_name=NM_139297.6
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=mm_101274.1
 
|tss_id=mm_101274.1

Latest revision as of 10:56, 26 July 2021

Basic information about the TSS


TSS ID:mm_101274.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:21370678
End:21370689
Strand:-
TSS Score:1
Start of the center position in the TSS region:21370683
End of the center position in the TSS region:21370684



Gene and protein annotation


Transcript_name:NM_139297.6
Distance:50
GeneID:216558
HGNC/MGI_ID:MGI:2183447
UniProt_ID:Q91ZJ5
Gene_name:UDP-glucose pyrophosphorylase 2
Gene_symbol:Ugp2
Gene_synonyms:
Gene_source:MGI:2183447



Transcript annotation


Transcript_name:NM_139297.6
Distance:50
Num_trans:12
All_trans:NM_139297:50 AK185393:154 BC061208:166 AK209798:199 AK196595:200 AK197624:200 ENSMUST00000102875.10:202 AF424698:202 AK033445:204 AK177085:419 AK214438:419 AK213550:-479



TATA-Box annotation


Distance to TSS:-55
Nearest PromoterID:NM_139297
Entrez ID:216558
Nearest Unigene:Mm.28877
Nearest Refseq:NM_139297
Nearest Ensembl:ENSMUSG00000001891
Gene Name:UDP-glucose pyrophosphorylase 2
Gene Alias:UDPGP|UGPase
Gene Description:UDP-glucose pyrophosphorylase 2
Gene Type:protein-coding
CpG%:0.12
GC%:0.726368
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-32(GGCTATTTATGG,-,0.00),-30(CTATTTATGGGC,+,0.00)