Personal tools

Difference between revisions of "TSS:Mm 101289.1"

From referenceTSS

Jump to: navigation, search
(Created page with "{{TSSDetail |all_trans=ENSMUST00000006071.13:0 AK158588:0 AK042975:0 AK083434:0 AK050758:0 AK083671:12 NM_011023:-20 uc007idy.1:-20 uc007idz.1:-20 BC057105:45 ENSMUST000001723...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
|all_trans=ENSMUST00000006071.13:0 AK158588:0 AK042975:0 AK083434:0 AK050758:0 AK083671:12 NM_011023:-20 uc007idy.1:-20 uc007idz.1:-20 BC057105:45 ENSMUST00000172395.2:-79 AK049430:-79 BC058354:445
+
|all_trans=MGI:97450
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.05
 
|cpg_percent=0.05
Line 6: Line 6:
 
|distance_to_tss=33
 
|distance_to_tss=33
 
|end=22001631
 
|end=22001631
 +
|end_of_center_position=22001619
 
|entrez_id=18423
 
|entrez_id=18423
 
|gc_percent=0.522388
 
|gc_percent=0.522388
|gene_alias=A730044F23Rik|jv
+
|gene_alias=A730044F23Rik{{!}}jv
 
|gene_description=orthodenticle homeobox 1
 
|gene_description=orthodenticle homeobox 1
 
|gene_id=18423
 
|gene_id=18423
Line 17: Line 18:
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=MGI:97450
 
|hgnc_mgi_id=MGI:97450
 +
|jv=
 
|nearest_ensembl=ENSMUSG00000005917
 
|nearest_ensembl=ENSMUSG00000005917
 
|nearest_promoter_id=NM_011023
 
|nearest_promoter_id=NM_011023
 
|nearest_refseq=NM_011023
 
|nearest_refseq=NM_011023
 
|nearest_unigene=Mm.129663
 
|nearest_unigene=Mm.129663
|num_trans=13
+
|num_trans=18423
 
|species=mouse
 
|species=mouse
 
|start=22001605
 
|start=22001605
 +
|start_of_center_position=22001618
 
|strand=-
 
|strand=-
 
|transcript_name=ENSMUST00000006071.13 AK158588 AK042975 AK083434 AK050758
 
|transcript_name=ENSMUST00000006071.13 AK158588 AK042975 AK083434 AK050758

Latest revision as of 10:57, 26 July 2021

Basic information about the TSS


TSS ID:mm_101289.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:22001605
End:22001631
Strand:-
TSS Score:1
Start of the center position in the TSS region:22001618
End of the center position in the TSS region:22001619



Gene and protein annotation


Transcript_name:ENSMUST00000006071.13 AK158588 AK042975 AK083434 AK050758
Distance:0
GeneID:18423
HGNC/MGI_ID:MGI:97450
UniProt_ID:Q3TYJ4 Q5SS54
Gene_name:orthodenticle homeobox 1
Gene_symbol:Otx1
Gene_synonyms:A730044F23Rik jv
Gene_source:MGI:97450



Transcript annotation


Transcript_name:ENSMUST00000006071.13 AK158588 AK042975 AK083434 AK050758
Distance:0
Num_trans:18423
All_trans:MGI:97450



TATA-Box annotation


Distance to TSS:33
Nearest PromoterID:NM_011023
Entrez ID:18423
Nearest Unigene:Mm.129663
Nearest Refseq:NM_011023
Nearest Ensembl:ENSMUSG00000005917
Gene Name:orthodenticle homeobox 1
Gene Alias:A730044F23Rik|jv
Gene Description:orthodenticle homeobox 1
Gene Type:protein-coding
CpG%:0.05
GC%:0.522388
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):