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Difference between revisions of "TSS:Mm 101345.1"

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{{TSSDetail
 
{{TSSDetail
|all_trans=BC079876:0 BC072622:-1 AK129454:7 BC055049:7 ENSMUST00000180260.7:-11 ENSMUST00000141353.7:-11 ENSMUST00000131612.1:-11 NR_156450:-11 NM_001347242:-11 NM_027860:-11 AK053838:-11 ENSMUST00000109532.8:-19 ENSMUST00000155903.7:56 AK029538:56
+
|all_trans=MGI:1918925
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.165
 
|cpg_percent=0.165
Line 23: Line 23:
 
|nearest_refseq=NM_027860
 
|nearest_refseq=NM_027860
 
|nearest_unigene=Mm.48031
 
|nearest_unigene=Mm.48031
|num_trans=14
+
|num_trans=71675
 
|species=mouse
 
|species=mouse
 
|start=23633604
 
|start=23633604

Latest revision as of 10:58, 26 July 2021

Basic information about the TSS


TSS ID:mm_101345.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:23633604
End:23633620
Strand:-
TSS Score:1
Start of the center position in the TSS region:23633612
End of the center position in the TSS region:23633613



Gene and protein annotation


Transcript_name:BC079876
Distance:0
GeneID:71675
HGNC/MGI_ID:MGI:1918925
UniProt_ID:
Gene_name:RIKEN cDNA 0610010F05 gene
Gene_symbol:0610010F05Rik
Gene_synonyms:
Gene_source:MGI:1918925



Transcript annotation


Transcript_name:BC079876
Distance:0
Num_trans:71675
All_trans:MGI:1918925



TATA-Box annotation


Distance to TSS:19
Nearest PromoterID:NM_027860
Entrez ID:71675
Nearest Unigene:Mm.48031
Nearest Refseq:NM_027860
Nearest Ensembl:ENSMUSG00000042208
Gene Name:RIKEN cDNA 0610010F05 gene
Gene Alias:Kiaa1841|mKIAA1841
Gene Description:RIKEN cDNA 0610010F05 gene
Gene Type:protein-coding
CpG%:0.165
GC%:0.78607
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):