Difference between revisions of "TSS:Mm 10140.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000132710.2:219 NM_172475:219 uc008ien.2:219 uc008ieo.2:219 AK034706:227 ENSMUST00000091497.10:228 BC058672:228 AK163887:245 |chr=chr2 |cpg_per...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |5330420J21= |
| + | |AI594879= | ||
| + | |C230040M21Rik= | ||
| + | |Frmd4= | ||
| + | |Gm13190= | ||
| + | |OTTMUSG00000010806= | ||
| + | |all_trans=MGI:1919850 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=-233 | |distance_to_tss=-233 | ||
|end=4152644 | |end=4152644 | ||
| + | |end_of_center_position=4152630 | ||
|entrez_id=209630 | |entrez_id=209630 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=2700017I06Rik | + | |gene_alias=2700017I06Rik{{!}}5330420J21{{!}}AI594879{{!}}C230040M21Rik{{!}}Frmd4{{!}}Gm13190{{!}}mKIAA1294 |
|gene_description=FERM domain containing 4A | |gene_description=FERM domain containing 4A | ||
|gene_id=209630 | |gene_id=209630 | ||
| Line 17: | Line 24: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1919850 | |hgnc_mgi_id=MGI:1919850 | ||
| + | |mKIAA1294= | ||
|nearest_ensembl=ENSMUSG00000026657 | |nearest_ensembl=ENSMUSG00000026657 | ||
|nearest_promoter_id=NM_172475 | |nearest_promoter_id=NM_172475 | ||
|nearest_refseq=NM_172475 | |nearest_refseq=NM_172475 | ||
|nearest_unigene=Mm.37932 | |nearest_unigene=Mm.37932 | ||
| − | |num_trans= | + | |num_trans=209630 |
|species=mouse | |species=mouse | ||
|start=4152615 | |start=4152615 | ||
| + | |start_of_center_position=4152629 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000132710 | + | |transcript_name=ENSMUST00000132710.2 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10140.1 | |tss_id=mm_10140.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8BIE6 | + | |uniprot_id=Q8BIE6 |
}} | }} | ||
Latest revision as of 10:59, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4152629 |
|---|---|
| End of the center position in the TSS region: | 4152630 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000132710.2 |
|---|---|
| Distance: | 219 |
| Num_trans: | 209630 |
| All_trans: | MGI:1919850 |
TATA-Box annotation
| Distance to TSS: | -233 |
|---|---|
| Nearest PromoterID: | NM_172475 |
| Entrez ID: | 209630 |
| Nearest Unigene: | Mm.37932 |
| Nearest Refseq: | NM_172475 |
| Nearest Ensembl: | ENSMUSG00000026657 |
| Gene Name: | FERM domain containing 4A |
| Gene Alias: | 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 |
| Gene Description: | FERM domain containing 4A |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
