Difference between revisions of "TSS:Mm 101414.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|AW557776= | |AW557776= | ||
|Ppp4r3b= | |Ppp4r3b= | ||
| − | |all_trans= | + | |all_trans=MGI:2444673 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-234 |
|end=29172756 | |end=29172756 | ||
|end_of_center_position=29172742 | |end_of_center_position=29172742 | ||
|entrez_id=104570 | |entrez_id=104570 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
| − | |gene_alias=AW011752 | + | |gene_alias=AW011752{{!}}AW557776{{!}}Smek2{{!}}mKIAA1387 |
| − | |gene_description= | + | |gene_description=protein phosphatase 4 regulatory subunit 3B |
|gene_id=320757 | |gene_id=320757 | ||
|gene_name=RIKEN cDNA A630052C17 gene | |gene_name=RIKEN cDNA A630052C17 gene | ||
| Line 22: | Line 22: | ||
|mKIAA1387= | |mKIAA1387= | ||
|nearest_ensembl=ENSMUSG00000020463 | |nearest_ensembl=ENSMUSG00000020463 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363358 |
|nearest_refseq=NM_134034 | |nearest_refseq=NM_134034 | ||
|nearest_unigene=Mm.276386 | |nearest_unigene=Mm.276386 | ||
| − | |num_trans= | + | |num_trans=320757 |
|species=mouse | |species=mouse | ||
|start=29172727 | |start=29172727 | ||
|start_of_center_position=29172741 | |start_of_center_position=29172741 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC059020 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101414.1 | |tss_id=mm_101414.1 | ||
Latest revision as of 10:59, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 29172741 |
|---|---|
| End of the center position in the TSS region: | 29172742 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC059020 |
|---|---|
| Distance: | 0 |
| Num_trans: | 320757 |
| All_trans: | MGI:2444673 |
TATA-Box annotation
| Distance to TSS: | -234 |
|---|---|
| Nearest PromoterID: | NM_001363358 |
| Entrez ID: | 104570 |
| Nearest Unigene: | Mm.276386 |
| Nearest Refseq: | NM_134034 |
| Nearest Ensembl: | ENSMUSG00000020463 |
| Gene Name: | RIKEN cDNA A630052C17 gene |
| Gene Alias: | AW011752|AW557776|Smek2|mKIAA1387 |
| Gene Description: | protein phosphatase 4 regulatory subunit 3B |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
