Difference between revisions of "TSS:Mm 101491.1"
From referenceTSS
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| Line 2: | Line 2: | ||
|BOD2.1= | |BOD2.1= | ||
|Fam44b= | |Fam44b= | ||
| − | |all_trans=NM_001024919 | + | |all_trans=NM_001024919:2 ENSMUST00000058060.13:-4 BC116435:-38 BC116436:-38 BC128508:-38 BC128509:-38 LF198417:-66 MA433994:-66 LF226703:134 MA462280:134 ENSMUST00000109415.1:137 AK009485:226 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 11: | Line 11: | ||
|entrez_id=69556 | |entrez_id=69556 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=2310022M17Rik | + | |gene_alias=2310022M17Rik{{!}}BOD2.1{{!}}Fam44b |
|gene_description=biorientation of chromosomes in cell division 1 | |gene_description=biorientation of chromosomes in cell division 1 | ||
|gene_id=69556 | |gene_id=69556 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_001024919 | |nearest_refseq=NM_001024919 | ||
|nearest_unigene=Mm.34183 | |nearest_unigene=Mm.34183 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=31671863 | |start=31671863 | ||
|start_of_center_position=31671872 | |start_of_center_position=31671872 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-74(GGCTATAAGAAC,-,0.00) |
| − | |transcript_name=NM_001024919 | + | |transcript_name=NM_001024919.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101491.1 | |tss_id=mm_101491.1 | ||
Latest revision as of 11:01, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 31671872 |
|---|---|
| End of the center position in the TSS region: | 31671873 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001024919.1 |
|---|---|
| Distance: | 2 |
| Num_trans: | 12 |
| All_trans: | NM_001024919:2 ENSMUST00000058060.13:-4 BC116435:-38 BC116436:-38 BC128508:-38 BC128509:-38 LF198417:-66 MA433994:-66 LF226703:134 MA462280:134 ENSMUST00000109415.1:137 AK009485:226 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_001024919 |
| Entrez ID: | 69556 |
| Nearest Unigene: | Mm.34183 |
| Nearest Refseq: | NM_001024919 |
| Nearest Ensembl: | ENSMUSG00000044502 |
| Gene Name: | biorientation of chromosomes in cell division 1 |
| Gene Alias: | 2310022M17Rik|BOD2.1|Fam44b |
| Gene Description: | biorientation of chromosomes in cell division 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -74(GGCTATAAGAAC,-,0.00) |
