Difference between revisions of "TSS:Mm 101555.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000109340.8:92 NM_027398:92 NM_001190885:92 NM_001290690:92 uc007ikp.2:92 uc007ikq.2:92 uc007iko.2:92 AK045948:92 AK014313:104 AK046398:104 AK0...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |Kchip1.2= |
| + | |all_trans=MGI:1917607 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance=92 | |distance=92 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=33843687 | |end=33843687 | ||
| + | |end_of_center_position=33843682 | ||
|entrez_id=70357 | |entrez_id=70357 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=KCHIP1 | + | |gene_alias=KCHIP1{{!}}Kchip1.2 |
|gene_description=Kv channel-interacting protein 1 | |gene_description=Kv channel-interacting protein 1 | ||
|gene_id=70357 | |gene_id=70357 | ||
| Line 18: | Line 20: | ||
|hgnc_mgi_id=MGI:1917607 | |hgnc_mgi_id=MGI:1917607 | ||
|nearest_ensembl=ENSMUSG00000053519 | |nearest_ensembl=ENSMUSG00000053519 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001190885 |
|nearest_refseq=NM_027398 | |nearest_refseq=NM_027398 | ||
|nearest_unigene=Mm.252514 | |nearest_unigene=Mm.252514 | ||
| − | |num_trans= | + | |num_trans=70357 |
|species=mouse | |species=mouse | ||
|start=33843676 | |start=33843676 | ||
| + | |start_of_center_position=33843681 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000109340.8 | + | |transcript_name=ENSMUST00000109340.8 AK045948 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101555.1 | |tss_id=mm_101555.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q9JJ57 |
}} | }} | ||
Latest revision as of 11:02, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 33843681 |
|---|---|
| End of the center position in the TSS region: | 33843682 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000109340.8 AK045948 |
|---|---|
| Distance: | 92 |
| Num_trans: | 70357 |
| All_trans: | MGI:1917607 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001190885 |
| Entrez ID: | 70357 |
| Nearest Unigene: | Mm.252514 |
| Nearest Refseq: | NM_027398 |
| Nearest Ensembl: | ENSMUSG00000053519 |
| Gene Name: | Kv channel-interacting protein 1 |
| Gene Alias: | KCHIP1|Kchip1.2 |
| Gene Description: | Kv channel-interacting protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
