Difference between revisions of "TSS:Mm 10161.1"
From referenceTSS
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| Line 6: | Line 6: | ||
|Gm13190= | |Gm13190= | ||
|OTTMUSG00000010806= | |OTTMUSG00000010806= | ||
| − | |all_trans=NM_001177843 | + | |all_trans=NM_001177843:-185 ENSMUST00000075767.13:-186 BC082808:-186 AK082365:230 ENSMUST00000176962.1:265 ENSMUST00000115039.7:299 AK043369:299 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| Line 15: | Line 15: | ||
|entrez_id=209630 | |entrez_id=209630 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias=2700017I06Rik | + | |gene_alias=2700017I06Rik{{!}}5330420J21{{!}}AI594879{{!}}C230040M21Rik{{!}}Frmd4{{!}}Gm13190{{!}}mKIAA1294 |
|gene_description=FERM domain containing 4A | |gene_description=FERM domain containing 4A | ||
|gene_id=209630 | |gene_id=209630 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_172475 | |nearest_refseq=NM_172475 | ||
|nearest_unigene=Mm.37932 | |nearest_unigene=Mm.37932 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=4401160 | |start=4401160 | ||
|start_of_center_position=4401166 | |start_of_center_position=4401166 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_001177843 | + | |transcript_name=NM_001177843.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10161.1 | |tss_id=mm_10161.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q8BIE6 |
}} | }} | ||
Latest revision as of 11:04, 26 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4401166 |
|---|---|
| End of the center position in the TSS region: | 4401167 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001177843.1 |
|---|---|
| Distance: | -185 |
| Num_trans: | 7 |
| All_trans: | NM_001177843:-185 ENSMUST00000075767.13:-186 BC082808:-186 AK082365:230 ENSMUST00000176962.1:265 ENSMUST00000115039.7:299 AK043369:299 |
TATA-Box annotation
| Distance to TSS: | 190 |
|---|---|
| Nearest PromoterID: | NM_001177843 |
| Entrez ID: | 209630 |
| Nearest Unigene: | Mm.37932 |
| Nearest Refseq: | NM_172475 |
| Nearest Ensembl: | ENSMUSG00000026657 |
| Gene Name: | FERM domain containing 4A |
| Gene Alias: | 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 |
| Gene Description: | FERM domain containing 4A |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
