Difference between revisions of "TSS:Mm 10170.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000153160.7:48 NM_001177844:48 uc008iet.2:48 uc008ieu.2:48 uc008iev.2:48 AK077327:48 ENSMUST00000176828.7:50 AK148414:50 ENSMUST00000142452.1:6...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |5330420J21= |
| + | |AI594879= | ||
| + | |C230040M21Rik= | ||
| + | |Frmd4= | ||
| + | |Gm13190= | ||
| + | |OTTMUSG00000010806= | ||
| + | |all_trans=MGI:1919850 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 6: | Line 12: | ||
|distance_to_tss=-50 | |distance_to_tss=-50 | ||
|end=4559706 | |end=4559706 | ||
| + | |end_of_center_position=4559704 | ||
|entrez_id=209630 | |entrez_id=209630 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=2700017I06Rik | + | |gene_alias=2700017I06Rik{{!}}5330420J21{{!}}AI594879{{!}}C230040M21Rik{{!}}Frmd4{{!}}Gm13190{{!}}mKIAA1294 |
|gene_description=FERM domain containing 4A | |gene_description=FERM domain containing 4A | ||
|gene_id=209630 | |gene_id=209630 | ||
| Line 17: | Line 24: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1919850 | |hgnc_mgi_id=MGI:1919850 | ||
| + | |mKIAA1294= | ||
|nearest_ensembl=ENSMUSG00000026657 | |nearest_ensembl=ENSMUSG00000026657 | ||
|nearest_promoter_id=NM_001177844 | |nearest_promoter_id=NM_001177844 | ||
|nearest_refseq=NM_172475 | |nearest_refseq=NM_172475 | ||
|nearest_unigene=Mm.37932 | |nearest_unigene=Mm.37932 | ||
| − | |num_trans= | + | |num_trans=209630 |
|species=mouse | |species=mouse | ||
|start=4559701 | |start=4559701 | ||
| + | |start_of_center_position=4559703 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000153160.7 | + | |transcript_name=ENSMUST00000153160.7 AK077327 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10170.1 | |tss_id=mm_10170.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q3TB04 |
}} | }} | ||
Latest revision as of 11:06, 26 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4559703 |
|---|---|
| End of the center position in the TSS region: | 4559704 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000153160.7 AK077327 |
|---|---|
| Distance: | 48 |
| Num_trans: | 209630 |
| All_trans: | MGI:1919850 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NM_001177844 |
| Entrez ID: | 209630 |
| Nearest Unigene: | Mm.37932 |
| Nearest Refseq: | NM_172475 |
| Nearest Ensembl: | ENSMUSG00000026657 |
| Gene Name: | FERM domain containing 4A |
| Gene Alias: | 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 |
| Gene Description: | FERM domain containing 4A |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
