Difference between revisions of "TSS:Mm 123942.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 5: | Line 5: | ||
|D14Sel6= | |D14Sel6= | ||
|E25BMM= | |E25BMM= | ||
| − | |all_trans= | + | |all_trans=MGI:1309517 |
|chr=chr14 | |chr=chr14 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=55 |
| − | |distance_to_tss= | + | |distance_to_tss=9284 |
|end=73376010 | |end=73376010 | ||
|end_of_center_position=73376005 | |end_of_center_position=73376005 | ||
|entrez_id=16432 | |entrez_id=16432 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| − | |gene_alias=AI256040 | + | |gene_alias=AI256040{{!}}Bri{{!}}Bri2{{!}}Bricd2b{{!}}D14Sel6{{!}}E25BMM{{!}}imBRI2 |
|gene_description=integral membrane protein 2B | |gene_description=integral membrane protein 2B | ||
| − | |gene_id= | + | |gene_id=16432 |
| − | |gene_name= | + | |gene_name=integral membrane protein 2B |
| − | |gene_source=MGI: | + | |gene_source=MGI:1309517 |
| − | |gene_symbol= | + | |gene_symbol=Itm2b |
| − | |gene_synonyms= | + | |gene_synonyms=Bri2 Bricd2b D14Sel6 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=MGI: | + | |hgnc_mgi_id=MGI:1309517 |
|imBRI2= | |imBRI2= | ||
|nearest_ensembl=ENSMUSG00000022108 | |nearest_ensembl=ENSMUSG00000022108 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_008410 | |nearest_refseq=NM_008410 | ||
|nearest_unigene=Mm.4266 | |nearest_unigene=Mm.4266 | ||
| − | |num_trans= | + | |num_trans=16432 |
|species=mouse | |species=mouse | ||
|start=73375999 | |start=73375999 | ||
|start_of_center_position=73376004 | |start_of_center_position=73376004 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000227454.1 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=mm_123942.1 | |tss_id=mm_123942.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2I3BPW7 |
}} | }} | ||
Latest revision as of 19:13, 26 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 73376004 |
|---|---|
| End of the center position in the TSS region: | 73376005 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000227454.1 |
|---|---|
| Distance: | 55 |
| Num_trans: | 16432 |
| All_trans: | MGI:1309517 |
TATA-Box annotation
| Distance to TSS: | 9284 |
|---|---|
| Nearest PromoterID: | NM_008410 |
| Entrez ID: | 16432 |
| Nearest Unigene: | Mm.4266 |
| Nearest Refseq: | NM_008410 |
| Nearest Ensembl: | ENSMUSG00000022108 |
| Gene Name: | integral membrane protein 2B |
| Gene Alias: | AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 |
| Gene Description: | integral membrane protein 2B |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
