Difference between revisions of "TSS:Mm 160820.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | | | + | |AA407876= |
| + | |AA409940= | ||
| + | |AA960376= | ||
| + | |ASY= | ||
| + | |C130026I10Rik= | ||
| + | |NOGO= | ||
| + | |NSP-CL= | ||
| + | |NgA= | ||
| + | |Nogo-A= | ||
| + | |Nogo-B= | ||
| + | |Nogo-C= | ||
| + | |all_trans=MGI:2442895 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 6: | Line 17: | ||
|distance_to_tss=45629 | |distance_to_tss=45629 | ||
|end=29764192 | |end=29764192 | ||
| + | |end_of_center_position=29764192 | ||
|entrez_id=68585 | |entrez_id=68585 | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
| − | |gene_alias=1110020G17Rik | + | |gene_alias=1110020G17Rik{{!}}AA407876{{!}}AA409940{{!}}AA960376{{!}}ASY{{!}}C130026I10Rik{{!}}NOGO{{!}}NSP-CL{{!}}NgA{{!}}Nogo-A{{!}}Nogo-B{{!}}Nogo-C{{!}}mKIAA0886{{!}}mKIAA4153 |
|gene_description=reticulon 4 | |gene_description=reticulon 4 | ||
|gene_id=237711 | |gene_id=237711 | ||
| Line 17: | Line 29: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2442895 | |hgnc_mgi_id=MGI:2442895 | ||
| + | |mKIAA0886= | ||
| + | |mKIAA4153= | ||
|nearest_ensembl=ENSMUSG00000020458 | |nearest_ensembl=ENSMUSG00000020458 | ||
|nearest_promoter_id=NM_024226 | |nearest_promoter_id=NM_024226 | ||
|nearest_refseq=NM_024226 | |nearest_refseq=NM_024226 | ||
|nearest_unigene=Mm.192580 | |nearest_unigene=Mm.192580 | ||
| − | |num_trans= | + | |num_trans=237711 |
|species=mouse | |species=mouse | ||
|start=29764191 | |start=29764191 | ||
| + | |start_of_center_position=29764191 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000123881.8 | + | |transcript_name=ENSMUST00000123881.8 BC024726 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_160820.1 | |tss_id=mm_160820.1 | ||
Latest revision as of 08:47, 27 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 29764191 |
|---|---|
| End of the center position in the TSS region: | 29764192 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000123881.8 BC024726 |
|---|---|
| Distance: | -41 |
| Num_trans: | 237711 |
| All_trans: | MGI:2442895 |
TATA-Box annotation
| Distance to TSS: | 45629 |
|---|---|
| Nearest PromoterID: | NM_024226 |
| Entrez ID: | 68585 |
| Nearest Unigene: | Mm.192580 |
| Nearest Refseq: | NM_024226 |
| Nearest Ensembl: | ENSMUSG00000020458 |
| Gene Name: | echinoderm microtubule associated protein like 6 |
| Gene Alias: | 1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153 |
| Gene Description: | reticulon 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
