Difference between revisions of "TSS:Mm 160829.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|AU022376= | |AU022376= | ||
|Pir121= | |Pir121= | ||
| − | |all_trans= | + | |all_trans=MGI:1924134 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| Line 13: | Line 13: | ||
|entrez_id=76884 | |entrez_id=76884 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=1500004I01Rik | + | |gene_alias=1500004I01Rik{{!}}6430511D02Rik{{!}}AA930218{{!}}AU022376{{!}}Pir121{{!}}mKIAA1168 |
|gene_description=cytoplasmic FMR1 interacting protein 2 | |gene_description=cytoplasmic FMR1 interacting protein 2 | ||
|gene_id=76884 | |gene_id=76884 | ||
| Line 24: | Line 24: | ||
|mKIAA1168= | |mKIAA1168= | ||
|nearest_ensembl=ENSMUSG00000020340 | |nearest_ensembl=ENSMUSG00000020340 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_133769 |
|nearest_refseq=NM_133769 | |nearest_refseq=NM_133769 | ||
|nearest_unigene=Mm.154358 | |nearest_unigene=Mm.154358 | ||
| − | |num_trans= | + | |num_trans=76884 |
|species=mouse | |species=mouse | ||
|start=46311978 | |start=46311978 | ||
|start_of_center_position=46311978 | |start_of_center_position=46311978 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=70(CGCCCTAAAAAG,-,0.00),72(CCCTAAAAAGAG,+,0.00) |
|transcript_name=AK147632 | |transcript_name=AK147632 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 08:47, 27 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 46311978 |
|---|---|
| End of the center position in the TSS region: | 46311979 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK147632 |
|---|---|
| Distance: | -20 |
| Num_trans: | 76884 |
| All_trans: | MGI:1924134 |
TATA-Box annotation
| Distance to TSS: | 379 |
|---|---|
| Nearest PromoterID: | NM_133769 |
| Entrez ID: | 76884 |
| Nearest Unigene: | Mm.154358 |
| Nearest Refseq: | NM_133769 |
| Nearest Ensembl: | ENSMUSG00000020340 |
| Gene Name: | cytoplasmic FMR1 interacting protein 2 |
| Gene Alias: | 1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168 |
| Gene Description: | cytoplasmic FMR1 interacting protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 70(CGCCCTAAAAAG,-,0.00),72(CCCTAAAAAGAG,+,0.00) |
