Difference between revisions of "TSS:Mm 161013.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |BC026530= |
| + | |Tcd1d16= | ||
| + | |all_trans=MGI:2443893 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-9 | |distance_to_tss=-9 | ||
|end=119228508 | |end=119228508 | ||
| + | |end_of_center_position=119228508 | ||
|entrez_id=207592 | |entrez_id=207592 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=B930087K01 | + | |gene_alias=B930087K01{{!}}BC026530{{!}}Tcd1d16 |
| − | |gene_description= | + | |gene_description=TBC1 domain family, member 16 |
|gene_id=207607 | |gene_id=207607 | ||
|gene_name=coiled-coil domain containing 40 | |gene_name=coiled-coil domain containing 40 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_172443 | |nearest_refseq=NM_172443 | ||
|nearest_unigene=Mm.205263 | |nearest_unigene=Mm.205263 | ||
| − | |num_trans= | + | |num_trans=207607 |
|species=mouse | |species=mouse | ||
|start=119228507 | |start=119228507 | ||
| + | |start_of_center_position=119228507 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENSMUST00000235971.1 AK046971 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_161013.1 | |tss_id=mm_161013.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A494BAV6 |
}} | }} | ||
Latest revision as of 08:52, 27 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 119228507 |
|---|---|
| End of the center position in the TSS region: | 119228508 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000235971.1 AK046971 |
|---|---|
| Distance: | 64 |
| Num_trans: | 207607 |
| All_trans: | MGI:2443893 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_172443 |
| Entrez ID: | 207592 |
| Nearest Unigene: | Mm.205263 |
| Nearest Refseq: | NM_172443 |
| Nearest Ensembl: | ENSMUSG00000039976 |
| Gene Name: | coiled-coil domain containing 40 |
| Gene Alias: | B930087K01|BC026530|Tcd1d16 |
| Gene Description: | TBC1 domain family, member 16 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
