Difference between revisions of "TSS:Mm 162648.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000193801.1:12 BC109344:12 BC109345:12 ENSMUST00000082321.8:-33 ENSMUST00000195347.5:-33 ENSMUST00000195722.1:-33 NM_007758:-33 uc007eez.1:-33...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | | | + | |CD21= |
| + | |CD35= | ||
| + | |Cr-1= | ||
| + | |Cr-2= | ||
| + | |Cr1= | ||
| + | |all_trans=MGI:88489 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
|distance=12 | |distance=12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=48 |
|end=195176682 | |end=195176682 | ||
| + | |end_of_center_position=195176671 | ||
|entrez_id=12902 | |entrez_id=12902 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=C3DR | + | |gene_alias=C3DR{{!}}CD21{{!}}CD35{{!}}Cr-1{{!}}Cr-2{{!}}Cr1 |
|gene_description=complement receptor 2 | |gene_description=complement receptor 2 | ||
|gene_id=12902 | |gene_id=12902 | ||
| Line 18: | Line 24: | ||
|hgnc_mgi_id=MGI:88489 | |hgnc_mgi_id=MGI:88489 | ||
|nearest_ensembl=ENSMUSG00000026616 | |nearest_ensembl=ENSMUSG00000026616 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001368765 |
|nearest_refseq=NM_007758 | |nearest_refseq=NM_007758 | ||
|nearest_unigene=Mm.235387 | |nearest_unigene=Mm.235387 | ||
| − | |num_trans= | + | |num_trans=12902 |
|species=mouse | |species=mouse | ||
|start=195176659 | |start=195176659 | ||
| + | |start_of_center_position=195176670 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-80(TGCTATTTAAGG,-,0.00) |
|transcript_name=ENSMUST00000193801.1 BC109344 BC109345 | |transcript_name=ENSMUST00000193801.1 BC109344 BC109345 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 09:27, 27 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 195176670 |
|---|---|
| End of the center position in the TSS region: | 195176671 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000193801.1 BC109344 BC109345 |
|---|---|
| Distance: | 12 |
| Num_trans: | 12902 |
| All_trans: | MGI:88489 |
TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NM_001368765 |
| Entrez ID: | 12902 |
| Nearest Unigene: | Mm.235387 |
| Nearest Refseq: | NM_007758 |
| Nearest Ensembl: | ENSMUSG00000026616 |
| Gene Name: | complement receptor 2 |
| Gene Alias: | C3DR|CD21|CD35|Cr-1|Cr-2|Cr1 |
| Gene Description: | complement receptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -80(TGCTATTTAAGG,-,0.00) |
