Difference between revisions of "TSS:Mm 162983.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|UGPase= | |UGPase= | ||
| − | |all_trans=NM_139297 | + | |all_trans=NM_139297:173 AK185393:277 BC061208:289 AK209798:322 AK196595:323 AK197624:323 ENSMUST00000102875.10:325 AF424698:325 AK033445:327 AK213550:-362 ENSMUST00000060895.5:-395 BC025585:-395 NM_001290634:-461 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 10: | Line 10: | ||
|entrez_id=216558 | |entrez_id=216558 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=UDPGP | + | |gene_alias=UDPGP{{!}}UGPase |
|gene_description=UDP-glucose pyrophosphorylase 2 | |gene_description=UDP-glucose pyrophosphorylase 2 | ||
|gene_id=216558 | |gene_id=216558 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_139297 | |nearest_refseq=NM_139297 | ||
|nearest_unigene=Mm.28877 | |nearest_unigene=Mm.28877 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=21370801 | |start=21370801 | ||
|start_of_center_position=21370803 | |start_of_center_position=21370803 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=88(GGCTATTTATGG,-,0.00) |
| − | |transcript_name=NM_139297 | + | |transcript_name=NM_139297.6 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_162983.1 | |tss_id=mm_162983.1 | ||
Latest revision as of 09:34, 27 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 21370803 |
|---|---|
| End of the center position in the TSS region: | 21370804 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_139297.6 |
|---|---|
| Distance: | 173 |
| Num_trans: | 13 |
| All_trans: | NM_139297:173 AK185393:277 BC061208:289 AK209798:322 AK196595:323 AK197624:323 ENSMUST00000102875.10:325 AF424698:325 AK033445:327 AK213550:-362 ENSMUST00000060895.5:-395 BC025585:-395 NM_001290634:-461 |
TATA-Box annotation
| Distance to TSS: | -175 |
|---|---|
| Nearest PromoterID: | NM_139297 |
| Entrez ID: | 216558 |
| Nearest Unigene: | Mm.28877 |
| Nearest Refseq: | NM_139297 |
| Nearest Ensembl: | ENSMUSG00000001891 |
| Gene Name: | UDP-glucose pyrophosphorylase 2 |
| Gene Alias: | UDPGP|UGPase |
| Gene Description: | UDP-glucose pyrophosphorylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 88(GGCTATTTATGG,-,0.00) |
