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Difference between revisions of "TSS:Mm 168320.1"

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Line 3: Line 3:
 
|Ts=
 
|Ts=
 
|Tss=
 
|Tss=
|all_trans=AK002659:11 NM_001048058:13 NM_001048057:13 NM_001362918:13 NM_023372:13 ENSMUST00000077915.9:-17 AK010518:24 AK012391:24 BC055346:24 BC034339:37 AK010277:40 AK151517:40 ENSMUST00000106602.9:-41 AB037665:-41 ENSMUST00000106599.7:42 BC047046:50 ENSMUST00000082092.4:59 BC094258:214 BC094644:214 BC081447:230
+
|all_trans=MGI:1914921
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.075
 
|cpg_percent=0.075
Line 25: Line 25:
 
|nearest_refseq=NM_023372
 
|nearest_refseq=NM_023372
 
|nearest_unigene=Mm.238817
 
|nearest_unigene=Mm.238817
|num_trans=20
+
|num_trans=67671
 
|species=mouse
 
|species=mouse
 
|start=114668564
 
|start=114668564

Latest revision as of 11:29, 27 July 2021

Basic information about the TSS


TSS ID:mm_168320.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:114668564
End:114668567
Strand:+
TSS Score:1
Start of the center position in the TSS region:114668565
End of the center position in the TSS region:114668566



Gene and protein annotation


Transcript_name:AK002659
Distance:11
GeneID:67671
HGNC/MGI_ID:MGI:1914921
UniProt_ID:
Gene_name:ribosomal protein L38
Gene_symbol:Rpl38
Gene_synonyms:0610025G13Rik Rbt Ts Tss
Gene_source:MGI:1914921



Transcript annotation


Transcript_name:AK002659
Distance:11
Num_trans:67671
All_trans:MGI:1914921



TATA-Box annotation


Distance to TSS:-14
Nearest PromoterID:NM_023372
Entrez ID:67671
Nearest Unigene:Mm.238817
Nearest Refseq:NM_023372
Nearest Ensembl:ENSMUSG00000057322
Gene Name:ribosomal protein L38
Gene Alias:0610025G13Rik|Rbt|Ts|Tss
Gene Description:ribosomal protein L38
Gene Type:protein-coding
CpG%:0.075
GC%:0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):