Difference between revisions of "TSS:Mm 28833.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 5: | Line 5: | ||
|Tbp-2= | |Tbp-2= | ||
|VDUP1= | |VDUP1= | ||
| − | |all_trans= | + | |all_trans=MGI:3641753 |
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 14: | Line 14: | ||
|entrez_id=56338 | |entrez_id=56338 | ||
|gc_percent=0.59204 | |gc_percent=0.59204 | ||
| − | |gene_alias=1200008J08Rik | + | |gene_alias=1200008J08Rik{{!}}AA682105{{!}}Hyplip1{{!}}THIF{{!}}Tbp-2{{!}}VDUP1 |
|gene_description=thioredoxin interacting protein | |gene_description=thioredoxin interacting protein | ||
|gene_id=100038464 | |gene_id=100038464 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_023719 | |nearest_refseq=NM_023719 | ||
|nearest_unigene=Mm.410189 | |nearest_unigene=Mm.410189 | ||
| − | |num_trans= | + | |num_trans=100038464 |
|species=mouse | |species=mouse | ||
|start=96557639 | |start=96557639 | ||
| Line 36: | Line 36: | ||
|tss_id=mm_28833.1 | |tss_id=mm_28833.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q3UPP6 |
}} | }} | ||
Latest revision as of 17:31, 27 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 96557669 |
|---|---|
| End of the center position in the TSS region: | 96557670 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000098839.2 AK143345 |
|---|---|
| Distance: | -116 |
| Num_trans: | 100038464 |
| All_trans: | MGI:3641753 |
TATA-Box annotation
| Distance to TSS: | -288 |
|---|---|
| Nearest PromoterID: | NM_001009935 |
| Entrez ID: | 56338 |
| Nearest Unigene: | Mm.410189 |
| Nearest Refseq: | NM_023719 |
| Nearest Ensembl: | ENSMUSG00000038393 |
| Gene Name: | predicted gene 15441 |
| Gene Alias: | 1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1 |
| Gene Description: | thioredoxin interacting protein |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
