Difference between revisions of "TSS:Mm 49108.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|OTTMUSG00000029336= | |OTTMUSG00000029336= | ||
| − | |all_trans= | + | |all_trans=MGI:3840148 MGI:5753638 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 13: | Line 13: | ||
|gene_description=UMAP1-MVP12 associated (UMA) domain containing 1 | |gene_description=UMAP1-MVP12 associated (UMA) domain containing 1 | ||
|gene_id=100036521 | |gene_id=100036521 | ||
| − | |gene_name=UMAP1-MVP12 associated (UMA) domain containing 1 | + | |gene_name=UMAP1-MVP12 associated (UMA) domain containing 1; predicted gene 45062 |
| − | |gene_source=MGI:3840148 | + | |gene_source=MGI:3840148 MGI:5753638 |
| − | |gene_symbol=Umad1 | + | |gene_symbol=Gm45062 Umad1 |
|gene_synonyms=Gm16039 | |gene_synonyms=Gm16039 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=MGI:3840148 | + | |hgnc_mgi_id=MGI:3840148 MGI:5753638 |
|nearest_ensembl=ENSMUSG00000089862 | |nearest_ensembl=ENSMUSG00000089862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001302354 |
|nearest_refseq=NM_001302353 | |nearest_refseq=NM_001302353 | ||
|nearest_unigene=Mm.446106 | |nearest_unigene=Mm.446106 | ||
| − | |num_trans= | + | |num_trans=100036521 |
|species=mouse | |species=mouse | ||
|start=8259379 | |start=8259379 | ||
|start_of_center_position=8259419 | |start_of_center_position=8259419 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000162034.7 ENSMUST00000160705.7 ENSMUST00000159433.7 ENSMUST00000161400.1 ENSMUST00000162564.6 AK009885 | + | |transcript_name=ENSMUST00000162034.7 ENSMUST00000160705.7 ENSMUST00000159433.7 ENSMUST00000161400.1 ENSMUST00000162564.6 AK009885 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_49108.1 | |tss_id=mm_49108.1 | ||
Latest revision as of 00:58, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 8259419 |
|---|---|
| End of the center position in the TSS region: | 8259420 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000162034.7 ENSMUST00000160705.7 ENSMUST00000159433.7 ENSMUST00000161400.1 ENSMUST00000162564.6 AK009885 |
|---|---|
| Distance: | 0 |
| Num_trans: | 100036521 |
| All_trans: | MGI:3840148 MGI:5753638 |
TATA-Box annotation
| Distance to TSS: | 132 |
|---|---|
| Nearest PromoterID: | NM_001302354 |
| Entrez ID: | 100036521 |
| Nearest Unigene: | Mm.446106 |
| Nearest Refseq: | NM_001302353 |
| Nearest Ensembl: | ENSMUSG00000089862 |
| Gene Name: | UMAP1-MVP12 associated (UMA) domain containing 1; predicted gene 45062 |
| Gene Alias: | Gm16039 |
| Gene Description: | UMAP1-MVP12 associated (UMA) domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
