Difference between revisions of "TSS:Mm 83316.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000180670.1:29 AK143007:29 |chr=chr9 |cpg_percent=0.095 |distance=29 |distance_to_tss=-135 |end=44134533 |entrez_id=84004 |gc_percent=0.741294...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |AV025631= |
| + | |CD146= | ||
| + | |CD149= | ||
| + | |Muc18= | ||
| + | |all_trans=MGI:3642689 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=29 | |distance=29 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-38 |
|end=44134533 | |end=44134533 | ||
| − | |entrez_id= | + | |end_of_center_position=44134524 |
| + | |entrez_id=100038560 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias= | + | |gene_alias=- |
| − | |gene_description= | + | |gene_description=predicted gene 10687 |
|gene_id=100038560 | |gene_id=100038560 | ||
|gene_name=predicted gene 10687 | |gene_name=predicted gene 10687 | ||
| Line 15: | Line 20: | ||
|gene_symbol=Gm10687 | |gene_symbol=Gm10687 | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=MGI:3642689 | |hgnc_mgi_id=MGI:3642689 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152189 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_152189 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.429758 |
| − | |num_trans= | + | |num_trans=100038560 |
| + | |s-endo= | ||
| + | |s-gicerin= | ||
|species=mouse | |species=mouse | ||
|start=44134513 | |start=44134513 | ||
| + | |start_of_center_position=44134523 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000180670. | + | |transcript_name=ENSMUST00000180670.2 AK143007 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_83316.1 | |tss_id=mm_83316.1 | ||
Latest revision as of 13:33, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 44134523 |
|---|---|
| End of the center position in the TSS region: | 44134524 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000180670.2 AK143007 |
|---|---|
| Distance: | 29 |
| Num_trans: | 100038560 |
| All_trans: | MGI:3642689 |
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NR_152189 |
| Entrez ID: | 100038560 |
| Nearest Unigene: | Mm.429758 |
| Nearest Refseq: | NR_152189 |
| Nearest Ensembl: | |
| Gene Name: | predicted gene 10687 |
| Gene Alias: | - |
| Gene Description: | predicted gene 10687 |
| Gene Type: | ncRNA |
| CpG%: | 0.095 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
