Difference between revisions of "TSS:Mm 991.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_001293804:18 NM_001289704:18 | + | |A430105C05Rik= |
| + | |CLARP= | ||
| + | |Cash= | ||
| + | |Casper= | ||
| + | |ENSMUSG00000072980= | ||
| + | |FLAME= | ||
| + | |FLAME-1= | ||
| + | |Flip= | ||
| + | |Gm9845= | ||
| + | |I-FLICE= | ||
| + | |MRIT= | ||
| + | |all_trans=NM_001293804:18 NM_001289704:18 NR_149258:18 NR_149257:18 NR_149256:18 ENSMUST00000149874.7:35 ENSMUST00000140940.7:35 AK009498:35 AK152515:35 ENSMUST00000164900.7:37 ENSMUST00000156870.1:43 ENSMUST00000124567.1:61 ENSMUST00000097723.2:71 ENSMUST00000097722.8:78 ENSMUST00000114313.7:87 U97076:87 | ||
| + | |c-Flip= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 6: | Line 18: | ||
|distance_to_tss=-23 | |distance_to_tss=-23 | ||
|end=58711473 | |end=58711473 | ||
| + | |end_of_center_position=58711468 | ||
|entrez_id=12633 | |entrez_id=12633 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
| − | |gene_alias=2310024N18Rik | + | |gene_alias=2310024N18Rik{{!}}A430105C05Rik{{!}}CLARP{{!}}Cash{{!}}Casper{{!}}FLAME{{!}}FLAME-1{{!}}Flip{{!}}Gm9845{{!}}I-FLICE{{!}}MRIT{{!}}c-Flip |
|gene_description=CASP8 and FADD-like apoptosis regulator | |gene_description=CASP8 and FADD-like apoptosis regulator | ||
|gene_id=12633 | |gene_id=12633 | ||
| Line 18: | Line 31: | ||
|hgnc_mgi_id=MGI:1336166 | |hgnc_mgi_id=MGI:1336166 | ||
|nearest_ensembl=ENSMUSG00000026031 | |nearest_ensembl=ENSMUSG00000026031 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_149257 |
|nearest_refseq=NM_009805 | |nearest_refseq=NM_009805 | ||
|nearest_unigene=Mm.336848 | |nearest_unigene=Mm.336848 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=mouse | |species=mouse | ||
|start=58711462 | |start=58711462 | ||
| + | |start_of_center_position=58711467 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001289704.2 NM_001293804.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_991.1 | |tss_id=mm_991.1 | ||
Latest revision as of 19:18, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 58711467 |
|---|---|
| End of the center position in the TSS region: | 58711468 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001289704.2 NM_001293804.1 |
|---|---|
| Distance: | 18 |
| Num_trans: | 16 |
| All_trans: | NM_001293804:18 NM_001289704:18 NR_149258:18 NR_149257:18 NR_149256:18 ENSMUST00000149874.7:35 ENSMUST00000140940.7:35 AK009498:35 AK152515:35 ENSMUST00000164900.7:37 ENSMUST00000156870.1:43 ENSMUST00000124567.1:61 ENSMUST00000097723.2:71 ENSMUST00000097722.8:78 ENSMUST00000114313.7:87 U97076:87 |
TATA-Box annotation
| Distance to TSS: | -23 |
|---|---|
| Nearest PromoterID: | NR_149257 |
| Entrez ID: | 12633 |
| Nearest Unigene: | Mm.336848 |
| Nearest Refseq: | NM_009805 |
| Nearest Ensembl: | ENSMUSG00000026031 |
| Gene Name: | CASP8 and FADD-like apoptosis regulator |
| Gene Alias: | 2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip |
| Gene Description: | CASP8 and FADD-like apoptosis regulator |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
