Difference between revisions of "TSS:Mm 9969.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK156786:0 U19118:4 BC064799:46 NM_007498:-73 uc007ece.1:-73 uc011wys.1:-73 BC019946:-73 AK133965:-76 ENSMUST00000027941.13:-80 ENSMUST00000131854.1:137...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:109384 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=81 | |distance_to_tss=81 | ||
|end=191183260 | |end=191183260 | ||
| + | |end_of_center_position=191183253 | ||
|entrez_id=11910 | |entrez_id=11910 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_007498 | |nearest_refseq=NM_007498 | ||
|nearest_unigene=Mm.2706 | |nearest_unigene=Mm.2706 | ||
| − | |num_trans= | + | |num_trans=11910 |
|species=mouse | |species=mouse | ||
|start=191183244 | |start=191183244 | ||
| + | |start_of_center_position=191183252 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGG,+,0.00),-33(CTTTAAAAGGGG,+,0.00) |
|transcript_name=AK156786 | |transcript_name=AK156786 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 19:31, 28 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 191183252 |
|---|---|
| End of the center position in the TSS region: | 191183253 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK156786 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11910 |
| All_trans: | MGI:109384 |
TATA-Box annotation
| Distance to TSS: | 81 |
|---|---|
| Nearest PromoterID: | NM_007498 |
| Entrez ID: | 11910 |
| Nearest Unigene: | Mm.2706 |
| Nearest Refseq: | NM_007498 |
| Nearest Ensembl: | ENSMUSG00000026628 |
| Gene Name: | activating transcription factor 3 |
| Gene Alias: | LRG-21 |
| Gene Description: | activating transcription factor 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGG,+,0.00),-33(CTTTAAAAGGGG,+,0.00) |
