Difference between revisions of "TSS:Mm 99840.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=MGI:1920498 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=-2578 | |distance_to_tss=-2578 | ||
|end=109344297 | |end=109344297 | ||
| + | |end_of_center_position=109344290 | ||
|entrez_id=67927 | |entrez_id=67927 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=RIKEN cDNA 1700096J18 gene | |gene_description=RIKEN cDNA 1700096J18 gene | ||
| − | |gene_id= | + | |gene_id=105243551 |
|gene_name=RIKEN cDNA 1600015H23 gene | |gene_name=RIKEN cDNA 1600015H23 gene | ||
|gene_source=MGI:1920498 | |gene_source=MGI:1920498 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NR_027883 | |nearest_refseq=NR_027883 | ||
|nearest_unigene=Mm.394490 | |nearest_unigene=Mm.394490 | ||
| − | |num_trans= | + | |num_trans=105243551 |
|species=mouse | |species=mouse | ||
|start=109344281 | |start=109344281 | ||
| + | |start_of_center_position=109344289 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-37(GGATATAAAGGC,-,0.00) |
|transcript_name=AK005466 | |transcript_name=AK005466 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 19:35, 28 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 109344289 |
|---|---|
| End of the center position in the TSS region: | 109344290 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK005466 |
|---|---|
| Distance: | 0 |
| Num_trans: | 105243551 |
| All_trans: | MGI:1920498 |
TATA-Box annotation
| Distance to TSS: | -2578 |
|---|---|
| Nearest PromoterID: | NR_027883 |
| Entrez ID: | 67927 |
| Nearest Unigene: | Mm.394490 |
| Nearest Refseq: | NR_027883 |
| Nearest Ensembl: | ENSMUSG00000099630 |
| Gene Name: | RIKEN cDNA 1600015H23 gene |
| Gene Alias: | - |
| Gene Description: | RIKEN cDNA 1700096J18 gene |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -37(GGATATAAAGGC,-,0.00) |
